Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1130 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCCATTGGTAACTGCGAGATTACGGTCGAGGCTAACCGCTTCACCTGCAACTCCGATTCAAACGGCGTCGTAATCTCTCTTCCCCGAAGCGGGAAGATCAAAGTGTCAGCAGTGGCTCCAAACCGTGGAAGCGCTTCTGAGGATTTGAGGTCTGGCGATAAAGAACACGAGTTCGTGCTAGTTAATCCTAAAGATGTTGATGCTATTAGCAAATCTTACCTTCAGGAAGTATTACAGATGTATACGACAGAGCTACCTGGAATGAATTATGCCGCGAATACAGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGTACACTACTTATCAAATCCACTTCTGTTGGAAATTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGCCATCTAATGTTTCTAGAGCTAAGGAAGAGACTTCAAAGTGTTGGTGTTCGTTCTATTTTATGCTGGGGGGACAAAGAATCAGAAGGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGGTACCAAAGGAAGGGCCCGCAGGTTACCCATAAAAGCTGATATTCAAAAATCATTATGCTTTCTTGGTGGTTCGACTCTCATGGTTTGCCACCTAGGGAAAGAATTATTAGCTGACGATGCTAACACTGTGAAGTATCTCCCCTCACAGTTTCATCAGAATTCCTTTACATCTGCCATTGCTGAAGATGAGCAGCTTGAATTTTCGGGAAAGTTACATGTGGATTTGAAATTTCCAGATAAATCTTCCCATAGAACAGAATCAAGTAAAAATCAACATGAAGCTTTGGTGAAAGAAGGATCTTCAACAGAATATGACAAACTCAGTGGATTTGACAGTCACAATGCTAAGGAATGCTGCACTGGCATTTCTCCTTTTGCCAAAGTAAATGATGATAGACAGGCCAGTCCAGAAAGTTCACAGGATGGAATTGATGCTAATGTGAAGTATTCTTCTCAATCTACAAAAGGTGCAAAGAGGGCCTGGGAAGCCTCTTTGTCCTCATTGAAGTCAAAAAGGGTGAAGGGGAGCCAGATGGTTGACTATCAACCAGATTCTAGCTGCGGTTTTATCTTCGAGACTGATAAGGCCAATCCTTGTTTTGATGAAGTCCCTCATGATCCTTCAATTACAAAAAGTTCTGAAAAATGTATCGGGGATTATTTGCATTTAGAAGCTCCCATCAACATAGACTTTCCATCAACTAAACAATGCTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTCACGAAGGTGATTGAAGACCTTGGTGGAAGTATATCACATGATGGAAGTATGACCACACACGTTGTCACAGGAAAAGTGAGGAAGACTCTGAATTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATTTCATCAAGTTGGTTAAAAGAAAGTTATCGTCAAGGAAGATTTGTAGATGAACTGCCTCACATACTGAATGATACAGATTATCTGCTGAAGTACAAATCTGATTTAAAAAATGCAGTTCTCCGGGCAAAAGCTAGCCCTGATGCTTTGTTTAAGGGTTATAATATATGTATTGCGGCTCATGTTCAAACTCCTAAAACATTGTCTGCAATTGTCAGGTCTGCAGGTGGTAATGTTATCAGTGGACTAGAAACGGTAAACGAAACATCAACAACAATCTTTGTGGCATGCGAAGAAGACACAGAAGAAGCAATGATAGCTGCACAGAAAGGTATATGGACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCACAGTTTGCAGAGTCCTTATAA 1950 0.4133 MAPKRKPSSPISIGNCEITVEANRFTCNSDSNGVVISLPRSGKIKVSAVAPNRGSASEDLRSGDKEHEFVLVNPKDVDAISKSYLQEVLQMYTTELPGMNYAANTGKQSKFLERCVTNGKYRTLLIKSTSVGNSGKVIAAITYQIIPADTEYAEIPLAAVNAIYQRKGFGHLMFLELRKRLQSVGVRSILCWGDKESEGFWLKQGFVEIAQVGTKGRARRLPIKADIQKSLCFLGGSTLMVCHLGKELLADDANTVKYLPSQFHQNSFTSAIAEDEQLEFSGKLHVDLKFPDKSSHRTESSKNQHEALVKEGSSTEYDKLSGFDSHNAKECCTGISPFAKVNDDRQASPESSQDGIDANVKYSSQSTKGAKRAWEASLSSLKSKRVKGSQMVDYQPDSSCGFIFETDKANPCFDEVPHDPSITKSSEKCIGDYLHLEAPINIDFPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGSISHDGSMTTHVVTGKVRKTLNFCTALCSGAWVISSSWLKESYRQGRFVDELPHILNDTDYLLKYKSDLKNAVLRAKASPDALFKGYNICIAAHVQTPKTLSAIVRSAGGNVISGLETVNETSTTIFVACEEDTEEAMIAAQKGIWTFSSEWFMNCVMRQELDLEASQFAESL* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1130 649 ProSiteProfiles BRCT domain profile. 453 532 IPR001357 -
Gso3g1130 649 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 649 - -
Gso3g1130 649 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 69 211 IPR016181 -
Gso3g1130 649 Gene3D BRCT domain 557 648 IPR036420 -
Gso3g1130 649 CDD BRCT_PAXIP1_rpt6_like 559 639 - -
Gso3g1130 649 CDD NAT_SF 133 192 - -
Gso3g1130 649 SUPERFAMILY BRCT domain 452 534 IPR036420 -
Gso3g1130 649 Pfam BRCA1 C Terminus (BRCT) domain 559 633 IPR001357 -
Gso3g1130 649 Pfam BRCA1 C Terminus (BRCT) domain 459 518 IPR001357 -
Gso3g1130 649 ProSiteProfiles BRCT domain profile. 555 638 IPR001357 -
Gso3g1130 649 Gene3D BRCT domain 444 556 IPR036420 -
Gso3g1130 649 SUPERFAMILY BRCT domain 555 638 IPR036420 -
Gso3g1130 649 Gene3D - 66 221 - -
Gso3g1130 649 SMART BRCT_7 445 522 IPR001357 -
Gso3g1130 649 SMART BRCT_7 557 636 IPR001357 -
Gso3g1130 649 MobiDBLite consensus disorder prediction 292 313 - -
Gso3g1130 649 PANTHER N-ACETYLTRANSFERASE 4 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1130 Gso-Chr3 36610775 36617502 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso3g1130 BRCT 7.7e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1130 - - gmx:100806087 1298.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1130 3 36610775 36617502 Gso3g1130 3 36610775 36617502 ECH
Gso19g1124 19 39409294 39415877 Gso3g1130 3 36610775 36617502 GST