Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1122 ATGAAGGTTGAAATTGAAGGCAGCCACAGTGATTATGCTGAATCTGTTTCCAGACAACCAGAAAATAGAGGAAGATTGGAATCCAAGAAGAAACTGAAGAAAGTGAGGTCAATAAGGCTTGTAAGATTGCCAAGCAAGAGATCATCCACCAGAGGAGGGAGACACCGCCATGATTATCTCTTCATTGACACAGAAAGTTTAGAGGGGCCAACACCAATTGAAATGGTAGATGCATCACCAAATTACATGAAGGCTACCAGCAGTTCTCATGCAAAAGATAGTATTCAGAATACACAAAGAATACTATTCACAAAGAAGACTTTGACAAGAATGTCTACTACTTTGAAACTGAAGAGAAGTCTGACCAGAAAGTTATCTGGAAGGACTGAACCAAAGAGGGAACTGAAGTCCTCAAGATCAATCAAGTTTGCAGCTGTCAAGGGCCAAAAATCAACAAGAAAGTTTTATGAATCTAATTATGGAAGTGATGACCAGAATTGGAAAAGTGCAAGTGATGCTGGTAACAAACTCCAGAGAGTCATAACCAGAAGATTAAGCTTGAAGCCCGTGAGGATCTTAGCAAAGATGCCTACTTTCAAATCAAAGAATTCTTCCATGGAGAGAGGCAATCAGATATCTCAATCCCCATACACAAGCTTGCTTAGAGCCACTTGTACTTCTGCTCTCAAGGATTCCCATTTTCCTGAGAAAATTGACCTCCCTCAAGAGGGAAGTGACTCTCAAGGAGTATCAGCTGTGAAGGTTTGTCCATATTCTTACTGCTCACTTCACGGTCAACGCCACACCAATCTGCCTCCACTGAAGCGCTTTGTGTCAATGAGGAGGCGCACGTTGAAGAGCCAAAAGCCAACAAAAATGGATTGTCAACCTGACACTAGATCAAAGCAGATTGGTAATGCAAAGAAAGCCGCTCAGAAAACTCAAACTGTCCACAAAGAAGATGGAAGATCTCATTTTCAGAACAAGAAAAAGCTGGCTAGGGGCTTATGGATTAGGCCTCATGGCACTCCAGCATCCACAGTTTCTGAAGGTGTGGAATCAACATCAACAGATAGAGTCGAGTTTTCTGCTCCTGATACTGAGATATTGGAGAGAGAAGTAACTAACACTGGCAACACAAGCAAAAATATGAAGCTGGATTGTGAAGTACTGAAGATGAGTTCTTTACAGAAAGAGTCTACACATGCTAGCACTACTGATATGGCAAGGGGAATGCAGGAAAGAGATAAAAAATTTGTCAAAATGTGGCAGTTGATGTATAAGCATGCTGTATTGAGTAACACAGGTGAAAATAAGCAGCAATTTGATGGGAAGGACAAGGAAGGAAGAGAGCAAGATTTCTTTGCAACTAATGAAGTGAACAACTCTTGTCGTGATGATTGTGATACAGATCAGGATATGGATGAGGAAAATAAGGATGCAATTGAGCTGGTGCAGAAAGCATTTGATGAAATCCTTCTTCCAGAGCCTGAAGACCTCTTTTCTGATGATCAATTCAAATCTGAAGGCATTGATTCAGATGTGGTACACTTAGAAAAGAGTGAAGTTGAGAGAAAAAGGAATACTTCAACATCCACAGAATCTCCAACAGCACAGAGGATGGGGACCAAACCTGACCAAAGAGCACCAAGAAGCTGGAGCAATCTGAAGAAGTTAATCCTCTTGAAAAGGTTTGTGAATGCATTAGAGAAGGTAAGAAACATCAACCCCAAAAGACCAAGACGTTTTCCTTCTGATGCTAACTTAGAAATAGAAAAAGTTTTTCTCAAGCACCAAACAGCGGAAGAGAAGAAGAATGCTGAGGAATGGATGCTTGACTATGCACTTCAAAAGGTTGTTTCTAAACTTGCACCTGCTCAAAGACAAAAAGTGACACTTCTAGTAAAAGCTTTTGAAACAATTCTGCCATTTCAAGTTGCTGAAAATAGTCCACGGTTTTCTCCAACAATGGAACCTCAAGCAAATCCAGTTCAACCCCTTGACAATTCCTCAAATCACAGCGAGGAAGAAACATCATTTTCTCATGATAGCAGTATGGAACTGACAGAAAATACTAGTGATGATCCAATGCCAGAACTGCACAATCCTACTACGCTCAAAGAAAGATGTCTTGAGTCTCTTGATTTTCCTGGAACCGAGACAGTCAAGAATATGCCTGCCTTTGGAGCTACTGAAGAAGACTTGAGTGGAAAGCAAAGTTTAGCTGGCAGTTATGATAATGAGGAGAAGATATCAAGTGACAGTGATAATATTTATCTTGTAGAGATCAAAGATACTACCTCAAGTTCCTTAAATGAGCCAGTTGAAATTATAAGAAGCAGTCATGAGGAGGCTCCAACCAATGAAACAGTCAATGATGTTCCAGAAGATTTGCTATCCAGTGTGAATACAGAAAATCCAGATATCAAATCTGAGTCACCTGGAAGAGATGTTGAAACCAAGAATCTGAATGGTGATAATGGGGAAAAAATTTCCATGTCCAAAAGTTTAGTCCTAGAAGGTTTAGTTAGATCACTCAGATCTAATTTGATTGGTTCAGGAGCACCTGTAAACGAACCAACTGCCAACAACAGAAAAGAAGGAATTGAAAATGTTAAACAGGAAACTGAGACTCTTGAAGAGTTCCCTACAAAGGAACAATCTGAAGCTCATATTAGTGCTGTTGTAGAACCTGAGACCCCTGTAGAGAAACAGAATAACACAGGATTGTGGTACTTGGTGTATAAGCACATGGTATCAAATATGGATGAAAACAATTCCGAGTCACTAATTGATGGGGCAGATGAAAAAGAGTCAGGGTTTGATGGGAGCAGAACAAGAGGAGCTTCCTTCTCTCATGAAAGTACACCCGTGACTGATGAAGAGATGAAATTTAAGGACCATGTCGTAGCTGATCCAGAAGTTGCACGCCAACAGAATGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATTCTTCCAGATGATCAGGATGACTTATCAGACAAGGAATCACTCACTGACAGCACAATTTCAGACAACTCCAAACAATCCAACAGAACTGAAAGAGTATACAGTGAAGGCCTGAACCAAAAAGAAGAACAGATGGAATCCGGGAACGGAATGATCCAAAAACAAGAAGAATCAGCACCAAAGGAGCAAAACAAAACAAACCAGAAAATGTCTACAAGCTGGAGCAATCTTAAAAAAGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGGAAATTCAACCCAAGAGGGCCTAGATATCTACCTCTAGAGCCTGATTCAGAAGCTGAAAAAGTTAACTTAAGGCATCAAGACATGGAAGAACGAAAAGGTACGGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCTGCTAGGAAAAGAAAAGTGGAGCTGCTGGTGGAAGCTTTTGAAACAGTCATGCCAACTATAAAAACTTGA 3483 0.4042 MKVEIEGSHSDYAESVSRQPENRGRLESKKKLKKVRSIRLVRLPSKRSSTRGGRHRHDYLFIDTESLEGPTPIEMVDASPNYMKATSSSHAKDSIQNTQRILFTKKTLTRMSTTLKLKRSLTRKLSGRTEPKRELKSSRSIKFAAVKGQKSTRKFYESNYGSDDQNWKSASDAGNKLQRVITRRLSLKPVRILAKMPTFKSKNSSMERGNQISQSPYTSLLRATCTSALKDSHFPEKIDLPQEGSDSQGVSAVKVCPYSYCSLHGQRHTNLPPLKRFVSMRRRTLKSQKPTKMDCQPDTRSKQIGNAKKAAQKTQTVHKEDGRSHFQNKKKLARGLWIRPHGTPASTVSEGVESTSTDRVEFSAPDTEILEREVTNTGNTSKNMKLDCEVLKMSSLQKESTHASTTDMARGMQERDKKFVKMWQLMYKHAVLSNTGENKQQFDGKDKEGREQDFFATNEVNNSCRDDCDTDQDMDEENKDAIELVQKAFDEILLPEPEDLFSDDQFKSEGIDSDVVHLEKSEVERKRNTSTSTESPTAQRMGTKPDQRAPRSWSNLKKLILLKRFVNALEKVRNINPKRPRRFPSDANLEIEKVFLKHQTAEEKKNAEEWMLDYALQKVVSKLAPAQRQKVTLLVKAFETILPFQVAENSPRFSPTMEPQANPVQPLDNSSNHSEEETSFSHDSSMELTENTSDDPMPELHNPTTLKERCLESLDFPGTETVKNMPAFGATEEDLSGKQSLAGSYDNEEKISSDSDNIYLVEIKDTTSSSLNEPVEIIRSSHEEAPTNETVNDVPEDLLSSVNTENPDIKSESPGRDVETKNLNGDNGEKISMSKSLVLEGLVRSLRSNLIGSGAPVNEPTANNRKEGIENVKQETETLEEFPTKEQSEAHISAVVEPETPVEKQNNTGLWYLVYKHMVSNMDENNSESLIDGADEKESGFDGSRTRGASFSHESTPVTDEEMKFKDHVVADPEVARQQNEAIKMVEEAIDSILPDDQDDLSDKESLTDSTISDNSKQSNRTERVYSEGLNQKEEQMESGNGMIQKQEESAPKEQNKTNQKMSTSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPLEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVMPTIKT* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1122 1160 Pfam Plant calmodulin-binding domain 541 643 IPR012417 GO:0005516
Gso3g1122 1160 Pfam Plant calmodulin-binding domain 1051 1156 IPR012417 GO:0005516
Gso3g1122 1160 SMART CaM_binding_2 529 643 IPR012417 GO:0005516
Gso3g1122 1160 SMART CaM_binding_2 1042 1156 IPR012417 GO:0005516
Gso3g1122 1160 MobiDBLite consensus disorder prediction 799 829 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 347 361 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 520 550 - -
Gso3g1122 1160 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 6 1158 IPR044681 GO:0005516
Gso3g1122 1160 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 651 674 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 932 959 - -
Gso3g1122 1160 Coils Coil 1030 1050 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 285 307 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 1008 1049 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 651 700 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 1 53 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 994 1063 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 340 361 - -
Gso3g1122 1160 PANTHER CALMODULIN BINDING PROTEIN PICBP 6 1158 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 684 699 - -
Gso3g1122 1160 MobiDBLite consensus disorder prediction 810 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1122 Gso-Chr3 36537612 36542229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1122 547 644 Calmodulin-binding Proteins AT5G04020 46.939 1.14e-19 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1122 - - gmx:100804484 2272.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1122 3 36537612 36542229 Gso3g1122 3 36537612 36542229 ECH
Gso19g1116 19 39338758 39342884 Gso3g1122 3 36537612 36542229 GST