Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1119 ATGGTTGCTTTGTTTTCCCCTCCGGTGTTCTCAACCAAGGGATGGTTCTTAGAAGAAGAGCCATTAAGCTATGATGTGTCTTCAGATTACTCATTTCCCTATCAATTTTTTGCACCACAGACACAGATTGAACTTGAAATAGAAAGGTCCTCTGCACCATCCCCTGAAGACCCTGCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTTAATGACTTGGTTTCTTCACTTCGTTCACTTCTTCCTGGGCCAGATCAAACGAAAAAAATGAGCATTCCAGCTACAGTTTCGCGAGTTTTAAAATACATACCTGAGTTACAACATCAAGTGCAAGCACTAACTAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCAAAAAATCTCAAAGGAGATTCGGTGAACAAAGAATCTCAAAGGAGAATTTCCCATCACAATTCTGATTTTGCTGTTTCAACTAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGGCTCACAAGGCTCCACTATCCGACATCTTGCAATGTTTAGAAAATAATGGCCTTTATTTGCTAAATGCTTCTTCCTCTGAAACTTTTGGAGGAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCCGAAATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA 726 0.4008 MVALFSPPVFSTKGWFLEEEPLSYDVSSDYSFPYQFFAPQTQIELEIERSSAPSPEDPAMVKKLSHNASERDRRKKVNDLVSSLRSLLPGPDQTKKMSIPATVSRVLKYIPELQHQVQALTKKKEELLCRISKNLKGDSVNKESQRRISHHNSDFAVSTSRLNDCEAVVHISSYEAHKAPLSDILQCLENNGLYLLNASSSETFGGRVFYNLHFQVEKTHRLESEILTEKLLSIYEKQRIF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1119 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gso3g1119 241 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
Gso3g1119 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
Gso3g1119 241 Coils Coil 110 130 - -
Gso3g1119 241 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
Gso3g1119 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Gso3g1119 241 CDD bHLH_AtORG2_like 62 136 - -
Gso3g1119 241 MobiDBLite consensus disorder prediction 49 76 - -
Gso3g1119 241 Gene3D - 56 143 IPR036638 GO:0046983
Gso3g1119 241 SMART finulus 67 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1119 Gso-Chr3 36453744 36455920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1119 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.200 7.19e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1119 HLH 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1119 - - gmx:100790212 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1113 19 39269189 39271561 Gso3g1119 3 36453744 36455920 GST