Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1118 ATGGTTGCTTTGTTTTCCCCTCCAGTGTTCTCAACCAAGGGATGGCTCTTAGAAGAGGATCCATTAAGCTATGATGTGTCCTCTGAGTACTCATTTCCCTATCAATTTTATTCACCACAGACACAGATTGAGCTTGAAATTGAAAGGTCCACTTCTCCATCCCCTGAAGACCCTGCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATCACTTGGTTTCTTCACTTCGTTCACTTCTTCCAGTGGCTGATCAAACGAAAAAAATGAGCATTCCGACTACAGTTTCGCGAGTCATAAAATACATACCCGAGTTACAACAGCAAGTGGAAGCACTATCTAAGAAAAAAGAGGATCTTTTGTGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGATTCTCAAAGGAGAATTTCCCACCACAACTCTGATTTTGTTGTTTCAACAAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGGCTCACAAGGCTCCACTATCCGAGATCTTGCAATGTTTAGAAAATAATGGCCTTCTTCTGCTAAATGCTTCTTCCTCTGAAACCTTTGGAGGAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCAGAGATTAGAGTCCGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA 726 0.4174 MVALFSPPVFSTKGWLLEEDPLSYDVSSEYSFPYQFYSPQTQIELEIERSTSPSPEDPAMVKKLSHNASERDRRKKVNHLVSSLRSLLPVADQTKKMSIPTTVSRVIKYIPELQQQVEALSKKKEDLLCRISRQLQGDAVNKDSQRRISHHNSDFVVSTSRLNDCEAVVHISSYEAHKAPLSEILQCLENNGLLLLNASSSETFGGRVFYNLHFQVEKTQRLESEILTEKLLSIYEKQRIF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1118 241 SMART finulus 67 119 IPR011598 GO:0046983
Gso3g1118 241 MobiDBLite consensus disorder prediction 49 74 - -
Gso3g1118 241 Coils Coil 110 130 - -
Gso3g1118 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Gso3g1118 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
Gso3g1118 241 CDD bHLH_AtORG2_like 62 135 - -
Gso3g1118 241 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
Gso3g1118 241 Gene3D - 56 142 IPR036638 GO:0046983
Gso3g1118 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gso3g1118 241 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1118 Gso-Chr3 36447529 36449891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1118 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.800 1.39e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1118 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1118 - - gmx:100803424 468.388