Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1102 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCTCTTGATTACCTCAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGTGTGGAGGGCCGCCTGGTCCACGCGCACCGCTGCATACTCGCCGCCAGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACGCGCCGTGCGGCCTCGACCCTGCCGGACCGCGAGGCGTTAACTCCTCGCGCTCCGGGGTAATCCCCGTCAACTCGGTGGGCTATGAGGTGTTTCTCCTCATGCTCCAGTTTCTCTACAGTGGCCAGGTCTCCATCGTGCCCCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGCGGCTGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTTGGCGTCGAACCGCTCGCATTGCTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCAACATGTTCCCACTTGGTGGCAAAATCAGGTCTCCCACCAGAGGTTCTAGCAAAGCACCTCCCAATAGACATCGTGGCGAAAATCGAAGAGCTCCGTCTCAAATCCTCACTGGCACGCCGCTCATTGGTTCCTTCTCACCACCACCACCACCATCACCCCCACCACCACGCGGCGGCGGCCCTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGACGTGGAACTCGTGAAGCTAATGGTAATGGGAGAAGGCCTTAACTTAGATGAAGCACTGGCCTTACCCTACGCAGTGGAGAATTGCAGCAGGGAAGTGGTGAAGGCCTTACTGGAGCTTGGTGCAGCCGACGTTAACTACCCGTCGGGTCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCTCCCGACATGGTGGCGGTCCTGCTGGACCACCACGCGGACCCGAACGTTAGAACAGTCGATGGGGTCACCCCTCTAGACATCCTCAGAACCCTAACCTCGGATTTTCTCTTTAAGGGTGCTGTCCCGGGATTGACCCACATTGAGCCCAATAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTCGTCATGTCGCGGGAAGAAGGAAATAATGCTAACAACAACAACAATGGTCCTCATAGTTCTTCATCAGCAGCGCCTATATACCCTCCTCCAATGAACGAGGATCACAACAACAACAACAACAGCAGTAGCAGCAGCGGCAACAACAACATTGGTAACCTTAACTTGGATTCTAGGTTGGTGTATCTCAACCTTGGTGCCACTGCCTCAATGAGTTCGAGACTGGATAACGCTGAGGACGAGAGAGAAGCCATGAACCAAAACATGTACCATCATCACCACTCTCATGACTTCTAG 1464 0.5594 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDAPCGLDPAGPRGVNSSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEPLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHPHHHAAAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNANNNNNGPHSSSSAAPIYPPPMNEDHNNNNNSSSSSGNNNIGNLNLDSRLVYLNLGATASMSSRLDNAEDEREAMNQNMYHHHHSHDF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1102 487 CDD BTB_POZ_NPR_plant 8 158 - -
Gso3g1102 487 Gene3D - 229 361 IPR036770 -
Gso3g1102 487 SMART ANK_2a 278 308 IPR002110 GO:0005515
Gso3g1102 487 SMART ANK_2a 313 342 IPR002110 GO:0005515
Gso3g1102 487 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Gso3g1102 487 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Gso3g1102 487 MobiDBLite consensus disorder prediction 396 440 - -
Gso3g1102 487 Pfam BTB/POZ domain 16 107 IPR000210 GO:0005515
Gso3g1102 487 ProSiteProfiles BTB domain profile. 25 105 IPR000210 GO:0005515
Gso3g1102 487 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Gso3g1102 487 Pfam Domain of unknown function (DUF3420) 193 255 IPR024228 -
Gso3g1102 487 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 483 IPR044284 GO:0099402
Gso3g1102 487 PANTHER REGULATORY PROTEIN NPR5 1 483 - -
Gso3g1102 487 Coils Coil 457 477 - -
Gso3g1102 487 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Gso3g1102 487 Gene3D Potassium Channel Kv1.1; Chain A 3 191 IPR011333 -
Gso3g1102 487 SMART BTB_4 25 158 IPR000210 GO:0005515
Gso3g1102 487 SUPERFAMILY POZ domain 9 156 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1102 Gso-Chr3 36256898 36260576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso3g1102 BTB 5.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1102 K14508 - gmx:100783294 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1097 19 39075036 39078760 Gso3g1102 3 36256898 36260576 GST