Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1095 ATGGGTAGCAGAAGTAGAACAGTAAACGTTAACACTAAGGACACTGACAAGGTTCTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGGCACTGGTATTCCAAAAAGATTCGCAACCAACTCTGGCTTCGACATCTGCTGGTCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCTAGCCCTAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAGTTTGATGATATCTTCAGACTGAAAGGTATTGCCGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGCGCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA 1332 0.4535 MGSRSRTVNVNTKDTDKVLNGMPSYAPPLPSSSNSMAMEATNAHPSRISEFGTLEQSLGFRVEDTINLSRNPMFNQMKSNSQALGADIQFGALNKALVFQKDSQPTLASTSAGRENWGETNMADASPRTDTSTDDTEDKNQRPERDESSGSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRSRQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLLSQLEPLAEQQLMGIYNLQQSSQQTEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLHQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1095 443 Coils Coil 177 204 - -
Gso3g1095 443 SUPERFAMILY Leucine zipper domain 158 201 IPR046347 GO:0003700|GO:0006355
Gso3g1095 443 MobiDBLite consensus disorder prediction 1 37 - -
Gso3g1095 443 MobiDBLite consensus disorder prediction 130 160 - -
Gso3g1095 443 CDD bZIP_HBP1b-like 158 210 - -
Gso3g1095 443 Gene3D - 157 209 - -
Gso3g1095 443 MobiDBLite consensus disorder prediction 1 18 - -
Gso3g1095 443 ProSiteProfiles DOG1 domain profile. 223 440 IPR025422 GO:0006351|GO:0043565
Gso3g1095 443 MobiDBLite consensus disorder prediction 104 160 - -
Gso3g1095 443 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 161 176 IPR004827 GO:0003700|GO:0006355
Gso3g1095 443 Pfam Seed dormancy control 241 315 IPR025422 GO:0006351|GO:0043565
Gso3g1095 443 Pfam bZIP transcription factor 158 198 IPR004827 GO:0003700|GO:0006355
Gso3g1095 443 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 62 443 - -
Gso3g1095 443 SMART brlzneu 154 223 IPR004827 GO:0003700|GO:0006355
Gso3g1095 443 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 200 IPR004827 GO:0003700|GO:0006355
Gso3g1095 443 MobiDBLite consensus disorder prediction 104 129 - -
Gso3g1095 443 PANTHER TRANSCRIPTION FACTOR TGA9 62 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1095 Gso-Chr3 36084029 36090363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1095 122 443 bZIP Transcription Factor Family AT3G12250 73.112 2.62e-168 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso3g1095 DOG1 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1095 K14431 - gmx:100780071 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1095 3 36084029 36090363 Gso3g1095 3 36084029 36090363 ECH
Gso19g1090 19 38906558 38912838 Gso3g1095 3 36084029 36090363 GST