Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1083 ATGCCTTACACGGTCCGAGAGAACCTCTCGATCGGGAACATCGGCGACGCGGCGGAGATTCTCGAAAACGGCGCCGCTCAGAGCGTGACGCACATCCTCTCCGTCCTCAGCTCCGCCTCCATCTCCTTCTTCTCCGAATGGAAAACCACTCTCTCCATCCCCGCCATGGAGATCACCAAAGTCCACGTGGCGGACGCCGCCGCCAAATCGGCTCTCCCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCCGCGACCTCAAGCTCGTGCGCATGGCCGTGCCTCTCAGAGACACCGAGAAAGATGACTTGCTCGATTACTTGGAAGTCTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTTCACTGTTTCGCCGGAGTTTCCAGAAGCGCGGCGATTATTACGGCGTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGTCCCAATGATGGTTTTCTTGAGCAGTTGAAAATGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAATACTATATGAAAATCATTTCTCAGGGTTGAGGATAGACAGTTCCAAACTTGGTGCAGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGCAGAAGAAACTACTAAAGTTGGAAATAATCATAGTCCTGCATATCGCTGTAAGAAGTGCCGACGACTTGTTGCATTGCAAGAACATGTCATAGACCATGTTCCTGGTGAGGGTGAGAGAGCCTTTGAGTTCCACAAACGGAGAGGTGGCAACCCTTTCAACAAATCTGATGAATTTGAGTGTTCATCTGTATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCAATGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGTCAGGCATACAATGCAGCTGCGGAAGCTGGATAACTCCAGCTTTTCAACTCCACAAAAGCTGGATAGATGTGAGTCCGATGTAA 1065 0.4995 MPYTVRENLSIGNIGDAAEILENGAAQSVTHILSVLSSASISFFSEWKTTLSIPAMEITKVHVADAAAKSALPPEKLLYSLEYAGRDLKLVRMAVPLRDTEKDDLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAIITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKILYENHFSGLRIDSSKLGADPGMPVEISSEAEETTKVGNNHSPAYRCKKCRRLVALQEHVIDHVPGEGERAFEFHKRRGGNPFNKSDEFECSSVFIEPLRWMKAVEEGAMEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKSWIDVSPM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1083 354 Gene3D Protein tyrosine phosphatase superfamily 4 202 IPR029021 -
Gso3g1083 354 SMART dsp_5 1 182 IPR020422 GO:0006470|GO:0008138
Gso3g1083 354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 161 IPR000387 GO:0016311|GO:0016791
Gso3g1083 354 PIRSF DUSP12 78 354 IPR016278 GO:0006470|GO:0008138
Gso3g1083 354 PIRSF DUSP12 3 74 IPR016278 GO:0006470|GO:0008138
Gso3g1083 354 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 185 IPR020422 GO:0006470|GO:0008138
Gso3g1083 354 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Gso3g1083 354 CDD DSP_DUSP12 5 187 - -
Gso3g1083 354 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 350 - -
Gso3g1083 354 Pfam Dual specificity phosphatase, catalytic domain 91 180 IPR000340 GO:0008138|GO:0016311
Gso3g1083 354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 184 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1083 Gso-Chr3 35943333 35947854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1083 90 180 Protein tyrosine phosphatase (PTP) family AT3G06110 39.130 1.49e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1083 K14819 - gmx:100776877 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1083 3 35943333 35947854 Gso3g1083 3 35943333 35947854 ECH
Gso19g1081 19 38788718 38793219 Gso3g1083 3 35943333 35947854 GST