Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1081 ATGCACCACTTTGCCTTTGCCATGGACAACTCTCACCTCCTCCAATTCCTTCCCAACACCACCACTTCCACCAACAACACCCCCTTCTTCCACCATGCACCACCACACACTCACTCCACCTTCTCTACTAATTCCTCCAATAATACTAGTTCCTACCCCTTCCACCTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTCGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGAAGGAGGGAGAGAATCAACTCCCACCTCGACCAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTTTGGCGAAGGTTGTTCAGCGGGTGAAGGAGTTGAAGCAACAAACATCCGAGATCACCGAGCTCGAAACCGTCCCGTCGGAGACTGACGAGATCACGGTGCTCGCCACCACCGGAGGGGATTACGCCTCCGGTGGTGACGACGGGAGGCTCATCTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCTGACCTCATCCCGGACCTCATAGAAATCCTCAACTCGCTTCACCTCAAAACCCTCAAAGCCGAAATGGCAACTCTCGGAGGAAGAACTCGCAACGTTCTCATCGTCGCTGCTGACAAAGAACACAGCATTGAATCCATCCACTTCCTTCAGAACTCGCTCAAGTCCCTTCTAGACCGGTCCAGTTCCGGCGACAGGTCGAAACGACGCCGTGGCTTAGACCGAAGACTAATGTCTTAA 750 0.5373 MHHFAFAMDNSHLLQFLPNTTTSTNNTPFFHHAPPHTHSTFSTNSSNNTSSYPFHLSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDQLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLATTGGDYASGGDDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLIVAADKEHSIESIHFLQNSLKSLLDRSSSGDRSKRRRGLDRRLMS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1081 249 SMART finulus 77 126 IPR011598 GO:0046983
Gso3g1081 249 CDD bHLH_AtAIG1_like 67 142 - -
Gso3g1081 249 PANTHER TRANSCRIPTION FACTOR BHLH30 10 248 IPR045847 GO:0003700|GO:0006355
Gso3g1081 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 131 IPR036638 GO:0046983
Gso3g1081 249 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Gso3g1081 249 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 10 248 - -
Gso3g1081 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Gso3g1081 249 Gene3D - 66 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1081 Gso-Chr3 35911832 35913541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1081 52 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 69.022 2.64e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1081 HLH 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1081 - K22484 gmx:100794930 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1081 3 35911832 35913541 Gso3g1081 3 35911832 35913541 ECH
Gso19g1078 19 38730200 38732345 Gso3g1081 3 35911832 35913541 GST
Gso3g1081 3 35911832 35913541 Gso2g1382 2 23455404 23457495 PCT
Gso2g1382 2 23455404 23457495 Gso3g1081 3 35911832 35913541 PCT