LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1078	ATGACCACGCTACCTCATTCATTTACTATGATTGTAACATTAATTATTGTTCTTGCCCAAACACTTGTGGTGGTGAACTCACTTCCTGAAGCTGATAAAATAACCAATTTGCCGGGGCAGCCACATGTCAAATTTCAGCAATATTCTGGTTACATTACCGTGGATGACCAAAATCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTGAAAAACACCCTACTTCCAAGCCAGTAGTCCTCTGGTTGAATGGAGGTCCTGGTTGTTCATCTATTGGAGTTGGAGCTTTAGTTGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTGTGAAAAATCATTATAGTTGGAACAAAGTGGCAAATGTGCTATACTTGGAATCACCAGCTGGTGTTGGATTTTCATACTCAAGCAATACATCTTTCTATACCTTAGTGACAGATGAAATTACAGCTAGAGATAATCTTATTTTTCTACAGCGATGGTTCACTGAATTCCCTGAGTACTCAAAAAACGACTTCTTCATTACAGGGGAGAGCTATGCAGGTCACTATGCTCCACAACTTGCACAACTTATTGTTCAAACAAAGACCAACTTCAATCTTAAGGGGGTAGCAATAGGCAATCCTCTAATGGAATTTGATACTGATTTGAACTCCAAAGCTGAATTCTTTTGGTCCCACGGACTGATTTCAGATTCAACTTATGATCTCTTCACCAGAGTTTGCAACTATTCCACAATTAGGAGACAAACGATACAAGGTAATCTTAGTGACGTTTGTGCAAAAATAAATGGACTGGTGTTTACTGAGGTTAGCAACTATATAGACCAATATGATGTCACTCTTGATGTGTGTCTGTCATCAGCAAATCAACAGGCTTATGTGCTGAATCAAATGCAAGAGACACAGAAGATAGATGTTTGTGTGGATGATAAAGCAGTCACATACTTAAACAGGAAAGATGTGCAGAAGGCTCTCCATGCTAAGCTTGTTGAAGTCTCCAAATGGTCAGCTTGCAGCAGAGTTCTCCATTATGACCGTCGGAATCTAGAGATACCAACCGTTTCTATTCTAGGCTCACTTGTTAATTCCAACATCAGAGTTCTGGTATACAGTGGAGATCAAGATTCAGTTATCCCATTACTGGGATCTCGGTCTCTGGTGAATGGATTAGCCAAGGAACTTGGACTGAATACAACAGTGGCATATAGAGCCTGGTTTGAGAGAAAACAGGTAGCAGGATGGACACAAGTATACGGAGAGCTCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTCACTCAACCACAGAGATCACTCGTGCTACTTAAAGCATTTCTAGAAGGAAAGCCACTACCTAATGTTAAATAA	1386	0.404	MTTLPHSFTMIVTLIIVLAQTLVVVNSLPEADKITNLPGQPHVKFQQYSGYITVDDQNQRALFYYFVEAEKHPTSKPVVLWLNGGPGCSSIGVGALVEHGPFKPGDNNVLVKNHYSWNKVANVLYLESPAGVGFSYSSNTSFYTLVTDEITARDNLIFLQRWFTEFPEYSKNDFFITGESYAGHYAPQLAQLIVQTKTNFNLKGVAIGNPLMEFDTDLNSKAEFFWSHGLISDSTYDLFTRVCNYSTIRRQTIQGNLSDVCAKINGLVFTEVSNYIDQYDVTLDVCLSSANQQAYVLNQMQETQKIDVCVDDKAVTYLNRKDVQKALHAKLVEVSKWSACSRVLHYDRRNLEIPTVSILGSLVNSNIRVLVYSGDQDSVIPLLGSRSLVNGLAKELGLNTTVAYRAWFERKQVAGWTQVYGELLSYATIRGASHEAPFTQPQRSLVLLKAFLEGKPLPNVK*	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1078	461	Pfam	Serine carboxypeptidase	39	454	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	ProSitePatterns	Serine carboxypeptidases, histidine active site.	424	441	IPR033124	GO:0004185
	Gso3g1078	461	Gene3D	alpha/beta hydrolase	29	288	IPR029058	-
	Gso3g1078	461	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	14	459	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	SUPERFAMILY	alpha/beta-Hydrolases	34	458	IPR029058	-
	Gso3g1078	461	Gene3D	-	356	454	-	-
	Gso3g1078	461	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	PRINTS	Carboxypeptidase C serine protease (S10) family signature	424	437	IPR001563	GO:0004185\|GO:0006508
	Gso3g1078	461	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Gso3g1078	461	Gene3D	-	309	345	-	-
	Gso3g1078	461	PANTHER	CARBOXYPEPTIDASE	14	459	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1078	Gso-Chr3	35846488	35849818	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1078	314	457	Calmodulin-binding Proteins	AT2G22960	29.252	1.54e-17	78.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g1078	3	35846488	35849818	Gso3g1078	3	35846488	35849818	ECH
	Gso19g1074	19	38651359	38654765	Gso3g1078	3	35846488	35849818	GST