Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1077 ATGACCATGCTACCTCAGTCATTTACTATGATTGCAACATTAATCATTGTTCTTGCACAAACACTTGTGGGGGTGAGTTCACTTCCAGAAGCTGATAAAATAATCAATTTGCCAGGGCAGCCAAAGGTCAAATTTCTGCAATATTCTGGTTATGTCACCGTGGATGATCAACATCAAAGAGCTTTGTTTTACTACTTTGTTGAAGCCGAAGAAGACCCTTCTTCCAAGCCATTAGTCCTATGGTTGAATGGAGGGCCCGGTTGTTCTTCGATTGGAACTGGAGCTTTTACTGAGCATGGTCCGTTCAGACCGAGTGACAACAATCTTCTTGAGAAAAATGATTATAGTTGGAACAAAGCGGCAAATATGTTATACTTGGAGTCACCAGCTGGTGTTGGTTTCTCTTACTCACGCAATAAATCTTTCTATGCCTTAGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTACAACGATGGTTCACTAAATTCCCTGAGTACTCAAAAAGAGACTTCTTCATTACAGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTCAAACCAAGACCAACTTCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTTGAGTTTAATACTGATTTCAACTCAAGATCTGAGTATTTTTGGTCCCACGGACTGATATCAGATTCAACATACGAAGTCTTAACTAGAGACTGCAACTTTTCCTCAATCAGGAGACAATGGCAAAATGGGAATCTTAGAGGGGTTTGTGAAAAAGCAAATAAGCTATTGGATAGTGAGGTTAGCTACTATGTGGATGAATATGATGTCACTCTTGATGTTTGTTTGTCACCAGTAAATCAACAGGCTTATGTGCTGAATCAGCTGCAAGAGACACAGAAGATAGATGTTTGTGTTGGTGATAAAACAACCACATACTTGAACACTAAAGAAGTCCAAGAAGCTCTACATGCTAATCTTGTTGGAGTCGCCAAATGGTCAACTTGCAGCTCAGTTCTGCATTATGACTATCAGAATCTAGAAGTACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTAGCATCAGGGTTCTAGTATACAGCGGAGATCAAGATTCAGTGATTCCATTATTAGGTTCGCGATCTCTAGTTAACGGATTAGCCAAGGAAATTGGACTGAATACAACAGTGGCCTATAGACCATGGTTTGGAGAAAAACAGGTGGCAGGATGGACACAAGTATATGGGGACATCTTATCATATGCCACTGTAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCACAGAGATCACTAGTGCTTCTTAAAGCATTTCTGGAAGGAAAGCCACTACCTGGTGTTGTATAA 1386 0.4048 MTMLPQSFTMIATLIIVLAQTLVGVSSLPEADKIINLPGQPKVKFLQYSGYVTVDDQHQRALFYYFVEAEEDPSSKPLVLWLNGGPGCSSIGTGAFTEHGPFRPSDNNLLEKNDYSWNKAANMLYLESPAGVGFSYSRNKSFYALVTDEITARDNLVFLQRWFTKFPEYSKRDFFITGESYGGHYVPQLAQLIVQTKTNFNLKGIAIGNPLLEFNTDFNSRSEYFWSHGLISDSTYEVLTRDCNFSSIRRQWQNGNLRGVCEKANKLLDSEVSYYVDEYDVTLDVCLSPVNQQAYVLNQLQETQKIDVCVGDKTTTYLNTKEVQEALHANLVGVAKWSTCSSVLHYDYQNLEVPTIPILGSLVKSSIRVLVYSGDQDSVIPLLGSRSLVNGLAKEIGLNTTVAYRPWFGEKQVAGWTQVYGDILSYATVRGASHEAPFSQPQRSLVLLKAFLEGKPLPGVV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1077 461 Gene3D - 309 345 - -
Gso3g1077 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 SUPERFAMILY alpha/beta-Hydrolases 36 458 IPR029058 -
Gso3g1077 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Gso3g1077 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 459 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Gso3g1077 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Gso3g1077 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Gso3g1077 461 Gene3D - 355 454 - -
Gso3g1077 461 PANTHER CARBOXYPEPTIDASE 9 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1077 Gso-Chr3 35835906 35839091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1077 317 457 Calmodulin-binding Proteins AT2G22960 31.206 2.43e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1077 K16297 - gmx:100792836 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1077 3 35835906 35839091 Gso3g1077 3 35835906 35839091 ECH
Gso19g1073 19 38639651 38642568 Gso3g1077 3 35835906 35839091 GST