Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1072 ATGAAGTCTTGGTCACTGGACGAGTGGAGGAACTACTTCGGGTCTGCGAATTCGGATATATTCGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGTCCTAAGGAGTTTAGAGTGAGGAGGGATTGGATTGCAGAGAGGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGTGTTGAGTTGGCTGTGGGTGCAGATAGTAAAAAAGAGAAACATGATGGTGATGATGGTGATAATGATAAGAGTGGGTTTGAGAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGGGATGCGAATCTTGGTGACAGCAATTATAGCTTTGGGGAGGCTGAAGCATTAAGTGATGAGATGGAAGAGGAGTCTCAGTATGTTGCGGAGATTTTGAGGATCAAGGATGTTCTGCTTAACCCTGAAGATGAGTCTGAGGCTGTGATATTTGAGTCATTGAGGAGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGGCAACGGAGATTGGCAAGGCGGTCAATCCTCTCCGGAAACATGGATCGAAGGACATTCGTCAACTTGCCAGGACTCTCATCAATGGCTGGAAAGAAATGGTGGATGAGTGGGTTAAGGCCACTACTACCACAGCTATCACAGGTTCAGAAGAAGGTACACCAGATTCAGTGAATCCATCCGTTGTAGATGATGATGAAGAAGAAGGACTTCCATCACCTCCCTTGGATGAAGGGGCTTTCTTTGTCACTCAGGCTGGTTCAATGGAGCTGTCACAGTTCTTTGATGGCATGGACGACGATGGAAATCCTCGACCAACTGGACCATTCAGCAAGAACCATGAGAATGGCAGAAAGCCAGCTTTTGACAGCCATGTTTTAGAGATGAGGAAGTTGCAGCCTTCCCATGACACAGTCGTCATTAACAGAGATGTTAAGAGTCAGCAACAAGCAAAGGAAAACAAGGCTGCTGTCATGCCTGTGAGGCCAAATAAACCTGTAACAGCTGATTCCGGGCCTGGCAGACCCCCAAAATCAAATGTGCAGCGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATGGAGAACAATTCAATCACTAGGAGGCCTCCAACTGCTCAGTTAGATAAATCCAAGCGTTCAGATGACGATGCAGTCCAAGTAAAGCTAGAAGCCACCAAGAGAAAACTTCAGGAGAGCTATCAACAAGCTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAACGATCTTCCCAAGCAAGGTTTGCACCGAAATACACATTTCAAACCTGGATATCACAGTAGGCATTGGGCTAATGGTCGAAGATAA 1368 0.4613 MKSWSLDEWRNYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDWIAERLFSCRLTRCVGCDRVELAVGADSKKEKHDGDDGDNDKSGFERDGVEFEGAGASKESKVNGDANLGDSNYSFGEAEALSDEMEEESQYVAEILRIKDVLLNPEDESEAVIFESLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLINGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNHENGRKPAFDSHVLEMRKLQPSHDTVVINRDVKSQQQAKENKAAVMPVRPNKPVTADSGPGRPPKSNVQRKSNMEPKMQQKMENNSITRRPPTAQLDKSKRSDDDAVQVKLEATKRKLQESYQQAEKAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHSRHWANGRR* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1072 455 MobiDBLite consensus disorder prediction 353 381 - -
Gso3g1072 455 MobiDBLite consensus disorder prediction 434 455 - -
Gso3g1072 455 Coils Coil 396 419 - -
Gso3g1072 455 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Gso3g1072 455 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 218 IPR035441 -
Gso3g1072 455 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Gso3g1072 455 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 222 IPR035441 -
Gso3g1072 455 CDD TFIIS_I 138 211 - -
Gso3g1072 455 MobiDBLite consensus disorder prediction 321 394 - -
Gso3g1072 455 MobiDBLite consensus disorder prediction 439 455 - -
Gso3g1072 455 MobiDBLite consensus disorder prediction 220 251 - -
Gso3g1072 455 MobiDBLite consensus disorder prediction 268 294 - -
Gso3g1072 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 454 IPR044805 -
Gso3g1072 455 SMART TFS2_5 137 212 IPR003617 GO:0005634
Gso3g1072 455 MobiDBLite consensus disorder prediction 72 92 - -
Gso3g1072 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1072 Gso-Chr3 35685627 35689909 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso3g1072 Med26 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1072 - - gmx:100817835 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1072 3 35685627 35689909 Gso3g1072 3 35685627 35689909 ECH
Gso19g1071 19 38568778 38573106 Gso3g1072 3 35685627 35689909 GST
Gso3g1072 3 35685627 35689909 Gso2g1306 2 17036447 17041449 PCT
Gso2g1306 2 17036447 17041449 Gso3g1072 3 35685627 35689909 PCT