Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1065 ATGGCGTCAAGAATTGTTCAACAACAACAAGCCAGAGGTGAAGCAGTAGTAGGGGGAGGAAAACAACAGAAGAAGAACGGTGTTGCTGATGGAAGGAACCGCAAAGCATTGGGTGACATTGGGAATTTGGCCAATGTAAGAGGCGTTGTTGATGCCAAACCAAATCGCCCCATCACAAGGAGTTTTGGTGCACAATTACTTGCCAATGCACAAGCAGCAGCAGCTGCTGATAATAGCAAGAGACAAGCATGTGCTAATGTGGCTGGTCCTCCTGCCGTTGCTAATGAAGGAGTTGCGGTGGCCAAAAGAGCGGCCCCCAAACCGGTTTCGAAGAAAGTGATCGTAAAACCTAAGCCTTCTGAGAAAGTCACTGACATTGATGCTAGTCCAGATAAGAAGGAGGTCCTGAAAGACAAGAAGAAGGAAGGAGATGCCAACCCCAAGAAGAAATCGCAACACACTCTTACTTCAGTGCTCACTGCTAGGAGCAAGGCAGCATGTGGCATAACAAACAAACCAAAGGAACAGATTATTGACATTGATGCTTCTGATGTTGACAATGAGCTTGCTGCTGTGGAGTACATTGATGACATTTACAAGTTCTACAAACTTGTTGAGAACGAGAGCCGCCCCCACGACTATATTGGTTCACAGCCTGAGATAAATGAGAGGATGAGAGCTATTCTGGTTGATTGGCTGATAGATGTTCACACCAAGTTTGAACTTTCACTTGAGACCCTTTACTTGACCATCAATATAATTGATCGGTTTTTAGCAGTTAAGACAGTTCCAAGGAGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAATATGAAGAAATCTGGCCCCCTGAGGTTAATGACTTTGTCTGCCTCTCAGATAGGGCTTACACTCATGAACATATACTAACCATGGAGAAAACCATATTGAACAAGCTGGAATGGACTTTGACTGTGCCAACACCTTTAGTTTTCCTTGTTCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGACAACATGGCTCATTTCCTGTCTGAGTTGGGAATGATGAACTACGCAACCTTAATGTACTGCCCGTCAATGGTTGCTGCCTCAGCAGTGCTTGCAGCAAGATGCACTCTGAACAAGGCTCCTTTTTGGAATGAGACACTTAAGCTGCACACTGGTTACTCACAAGAGCAACTCATGGATTGTGCTAGACTATTGGTGGGGTTCCACTCCACTCTTGAGAATGGAAAGCTTAGGGTTGTGTACAGAAAATATTCTGACCCTCAGAAGGGTGCTGTTGCTGTGCTCCCACCCGCTAAATTTCTTCTGCCTGAAGGTTCTGCTTCCCAACATAGTTAA 1365 0.4549 MASRIVQQQQARGEAVVGGGKQQKKNGVADGRNRKALGDIGNLANVRGVVDAKPNRPITRSFGAQLLANAQAAAAADNSKRQACANVAGPPAVANEGVAVAKRAAPKPVSKKVIVKPKPSEKVTDIDASPDKKEVLKDKKKEGDANPKKKSQHTLTSVLTARSKAACGITNKPKEQIIDIDASDVDNELAAVEYIDDIYKFYKLVENESRPHDYIGSQPEINERMRAILVDWLIDVHTKFELSLETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEHILTMEKTILNKLEWTLTVPTPLVFLVRFIKASVPDQELDNMAHFLSELGMMNYATLMYCPSMVAASAVLAARCTLNKAPFWNETLKLHTGYSQEQLMDCARLLVGFHSTLENGKLRVVYRKYSDPQKGAVAVLPPAKFLLPEGSASQHS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1065 454 MobiDBLite consensus disorder prediction 1 35 - -
Gso3g1065 454 ProSitePatterns Cyclins signature. 226 257 IPR006671 -
Gso3g1065 454 Pfam Cyclin, N-terminal domain 197 321 IPR006671 -
Gso3g1065 454 MobiDBLite consensus disorder prediction 114 149 - -
Gso3g1065 454 PANTHER CYCLINS 21 447 IPR039361 -
Gso3g1065 454 SMART Cyclin_C_2 324 441 IPR004367 -
Gso3g1065 454 Gene3D - 211 322 - -
Gso3g1065 454 PIRSF Cyclin_A_B_D_E 1 454 IPR039361 -
Gso3g1065 454 SUPERFAMILY Cyclin-like 186 321 IPR036915 -
Gso3g1065 454 MobiDBLite consensus disorder prediction 108 155 - -
Gso3g1065 454 CDD CYCLIN 225 314 IPR013763 -
Gso3g1065 454 Pfam Cyclin, C-terminal domain 324 440 IPR004367 -
Gso3g1065 454 SMART cyclin_7 328 410 IPR013763 -
Gso3g1065 454 SMART cyclin_7 231 315 IPR013763 -
Gso3g1065 454 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 447 - -
Gso3g1065 454 Gene3D - 197 436 - -
Gso3g1065 454 SUPERFAMILY Cyclin-like 323 442 IPR036915 -
Gso3g1065 454 CDD CYCLIN 322 409 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1065 Gso-Chr3 35566625 35569797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1065 1 445 Core Cell Cycle Gene Families AT4G37490 52.174 5.75e-145 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1065 K21777 - gmx:547920 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1065 3 35566625 35569797 Gso3g1065 3 35566625 35569797 ECH
Gso19g1068 19 38486988 38489970 Gso3g1065 3 35566625 35569797 GST