Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1063 ATGAGGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAGTTTCCGTCTCCAGAAGAACTCATGCCTCTATCGCAAACCCTAATTACTCCCGATCTAGCCATGGCCTTCGACATCCGAAACCCTCACACCACCAACACCGCTCAGCAACAACACCACCAACACCAACAACAACCGCAACAACAACAACAACCTTCGAACCCTTCCTCGCTCCCCAACCCGCTACAGCAACAACAACAACAACAACAACCTACCTCCGCCGAGTTCGCCGACTCCGGCGAACTCGGCTCTGGCACCGCCGGCGAGGAGCCGGCGCGTACCCTAAAACGGCCCCGCCTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTTGACGCCGTCGCGCACCTCGGCATCAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGCGAAAACGTCGCTAGTCACTTGCAGAAGTACCGTCTCTACCTGAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGTCCAGGCGGCGGCGCCTCCGGCGCCGTGGCCGACCCCGCCACCGACCACTTGTTCGCCAGCTCCCCGGTTCCGGCGCATTTCTTGCACCCGGCCGCGAGGCCGAATTCGGATCACTTCCTGCCGTTCGTGCCGGCGCTCCACCCCCATCAGCAGCAGCAGCAGATGGCGGCGGCGGCGCAGTACCACCGGCAGGTGGGGCATTTCGGGTCCCCGCCGAACGGGCACTTCGAGAACCCGTTCATGTCTAGGCCGAATCTTCAGAGAATGGGAGGTGGTGGTGGTGGAGGTCCTGTGCACAACAACCACCACCCTGTGAGTGGTTATGTGGAGGACATGGAGTCTGCTAATGCTGCCTCTGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACTGGAGATGATTGA 939 0.5985 MREEDSNWFSRWEEEFPSPEELMPLSQTLITPDLAMAFDIRNPHTTNTAQQQHHQHQQQPQQQQQPSNPSSLPNPLQQQQQQQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVPALHPHQQQQQMAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGGPVHNNHHPVSGYVEDMESANAASGGRKVLTLFPTGDD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1063 312 MobiDBLite consensus disorder prediction 1 110 - -
Gso3g1063 312 Gene3D - 108 170 - -
Gso3g1063 312 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 312 - -
Gso3g1063 312 MobiDBLite consensus disorder prediction 41 93 - -
Gso3g1063 312 MobiDBLite consensus disorder prediction 251 285 - -
Gso3g1063 312 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 312 IPR044841 GO:0003700|GO:0006355
Gso3g1063 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Gso3g1063 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Gso3g1063 312 SUPERFAMILY Homeodomain-like 108 168 IPR009057 -
Gso3g1063 312 SUPERFAMILY beta-sandwich domain of Sec23/24 42 88 - -
Gso3g1063 312 MobiDBLite consensus disorder prediction 1 18 - -
Gso3g1063 312 Pfam Myb-like DNA-binding domain 115 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1063 Gso-Chr3 35552915 35555176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1063 1 312 G2-like Transcription Factor Family AT3G10760 55.833 7.03e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g1063 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1063 - - gmx:100815363 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1063 3 35552915 35555176 Gso3g1063 3 35552915 35555176 ECH
Gso19g1067 19 38473337 38476192 Gso3g1063 3 35552915 35555176 GST