Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1052 ATGTCAATGGCACTCTCTCAGCTAAGCCACTCTCTGGAAAATGAACTGAAAGGTGCTGAAGACTCAGAATTTCCTCTGAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAAGAAGGATCCCTTCCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTAGCATAAGGGATTTGACTGGCGATGGAGGAGTCAAGAAAAAGATAATACGGGAGGGAGAAGGATGGGCAACTCCCAGAGAAGCTGATGAGGTTCTAGTGAAATATGAAGCAAGACTAGAGAATGGGATGCTTGTCTCCAAGTCTGATCAGGGTGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCCATGAGCATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTATGAGATTCTGTTACGGACTCAGTCAAAATTCAAGTAGAATCACTGAGCTAGAAGGTGTTCTTCCACCAGATTCAAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTGCTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATTAAGAATTTGGGTGAGGGGTTTGATCGCCCTAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGGTACGATTATTGAGAGCAAAGGATCAGAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTACCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGGAGAGCAAGCTCTGGTAACTGTGGATGCTGAATATTTGTGCGACTATAATAATTCAAAGGGAAACACAGCTAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGATACACAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAGGTTGAAAATTTCAGGCACGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAGTGTCGTGCTAATACCTTACATTTATCCTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTTAAATATAAAGGCTCTTTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAAGAGCTTTGATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGACATGAAGCTGACATCTTCAGCACAATGCTTTCAAGAATGAACTAG 1536 0.4004 MSMALSQLSHSLENELKGAEDSEFPLKEIGNEGLTKRILRKGVTWQTPFSGDEVEGEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSLPLIPPNATLIFDIEMLSWSSIRDLTGDGGVKKKIIREGEGWATPREADEVLVKYEARLENGMLVSKSDQGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAMRFCYGLSQNSSRITELEGVLPPDSNLTSIKLELVSWKIVADVTGDKKILKKIKNLGEGFDRPNEGSQVKVIYLCKGEDGTIIESKGSEEEPFEFTTQEEQVPEGLERAIMTMKKGEQALVTVDAEYLCDYNNSKGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKVENFRHASKKYEKAVKYIEFDHSFSEDEKCRANTLHLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSRHEADIFSTMLSRMN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1052 511 SUPERFAMILY FKBP-like 30 110 - -
Gso3g1052 511 SUPERFAMILY FKBP-like 115 200 - -
Gso3g1052 511 Gene3D - 55 112 IPR046357 GO:0003755
Gso3g1052 511 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 110 IPR001179 GO:0003755
Gso3g1052 511 SUPERFAMILY FKBP-like 226 364 - -
Gso3g1052 511 Pfam Tetratricopeptide repeat 446 478 IPR001440 GO:0005515
Gso3g1052 511 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 257 345 IPR001179 GO:0003755
Gso3g1052 511 Gene3D Tetratricopeptide repeat domain 348 505 IPR011990 GO:0005515
Gso3g1052 511 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 253 342 IPR001179 GO:0003755
Gso3g1052 511 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 134 202 IPR001179 GO:0003755
Gso3g1052 511 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 107 IPR001179 GO:0003755
Gso3g1052 511 ProSiteProfiles TPR repeat profile. 445 478 IPR019734 GO:0005515
Gso3g1052 511 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 138 218 IPR001179 GO:0003755
Gso3g1052 511 SUPERFAMILY TPR-like 352 506 IPR011990 GO:0005515
Gso3g1052 511 Gene3D - 113 229 IPR046357 GO:0003755
Gso3g1052 511 Gene3D - 230 347 IPR046357 GO:0003755
Gso3g1052 511 PANTHER PEPTIDYLPROLYL ISOMERASE 56 232 - -
Gso3g1052 511 PANTHER PEPTIDYLPROLYL ISOMERASE 338 511 - -
Gso3g1052 511 PANTHER PEPTIDYLPROLYL ISOMERASE 227 333 - -
Gso3g1052 511 PANTHER PEPTIDYLPROLYL ISOMERASE 3 55 - -
Gso3g1052 511 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 232 - -
Gso3g1052 511 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 227 333 - -
Gso3g1052 511 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 55 - -
Gso3g1052 511 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 338 511 - -
Gso3g1052 511 SMART tpr_5 445 478 IPR019734 GO:0005515
Gso3g1052 511 SMART tpr_5 411 444 IPR019734 GO:0005515
Gso3g1052 511 SMART tpr_5 362 395 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1052 Gso-Chr3 35394460 35399230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1052 28 510 Calmodulin-binding Proteins AT5G48570 52.794 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1052 - - gmx:100785412 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1052 3 35394460 35399230 Gso3g1052 3 35394460 35399230 ECH