Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1049 ATGAAGCGCAAGATCGAGGAAGTGGAAGAAGAGAATCAGTTCTCATGTATGTTCTGCAGCAAAAAGTTCTCGAGTCCTCAAGCTCTAGGAGGACACCAAAATGCCCACAAAAAAGAGCGAAACCTCTTGATCAGTATGGATAAAGAAAAAGAGATGAATGCTCTTGGATTTAGCCCAGCTAATGTTCCCATGCAATCTAGGGCACCGTTTTATCCGTATTCATCACATTTATACATGTCAAACCTTCCCTTGCAAGCAAGGACACTCCCTTATAATGGTGCATACATGCACCCCATGACAGAACCTGGTTATTGCATTAACCAACGATTTTCCTTACCAACATCTCCATTGATTACTCGGAGTGAATCTACAAGACCCATTGTTGGTTCTTCTTCTAGTGTTGGTGCTGGTTTTGGTCAACTTCAGGGAAGTCCAAGTGAATCAAATAAAGAATCACGTCCAGAAGTTTTGGATTTGTCACTAAAACTTTGA 492 0.4146 MKRKIEEVEEENQFSCMFCSKKFSSPQALGGHQNAHKKERNLLISMDKEKEMNALGFSPANVPMQSRAPFYPYSSHLYMSNLPLQARTLPYNGAYMHPMTEPGYCINQRFSLPTSPLITRSESTRPIVGSSSSVGAGFGQLQGSPSESNKESRPEVLDLSLKL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1049 163 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Gso3g1049 163 SUPERFAMILY beta-beta-alpha zinc fingers 10 41 IPR036236 -
Gso3g1049 163 PANTHER OS02G0182300 PROTEIN 10 163 - -
Gso3g1049 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 41 IPR013087 -
Gso3g1049 163 MobiDBLite consensus disorder prediction 123 163 - -
Gso3g1049 163 Gene3D Classic Zinc Finger 2 58 - -
Gso3g1049 163 PANTHER ZINC FINGER PROTEIN JAGGED 10 163 IPR045320 GO:0003700
Gso3g1049 163 MobiDBLite consensus disorder prediction 123 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1049 Gso-Chr3 35375248 35375739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1049 14 53 C2H2 Transcription Factor Family AT5G01860 62.500 6.95e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1049 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1049 - - gmx:102667297 315.849