Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1036 ATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCCGTGCTCCGCTTCCCCACGGTGCGCCCCCTCCCCTTCGCGCGCCTCGTCGCCGCCTCCCGCCGCCGCCTCTTCCTCTCCGACTGCGCCGACCGCCGATCCGACGACGACGGAGATGGTGACGGCGACTCCGGCGAGTGCGCGTACTCGCGGGCGGTGCTCGTGCTCGACATGGTCTGGAACCTCGCCTTCGTCGTCGTCGCCGCCGGCGTCCTCCTCTCCACGCTCCGCGAGCGGCCGTCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTACTTTGAGTTCCGAACCGGAATTCGCGACTCCTTCTCTCACACTGCCTATAGTATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGATCTTTGGATTTTATTGGATTGTTGTGGGTGACCAAGCACTTTTGGAAGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCCCTCTTCTGCATCATCCCAATAATAGCACTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCTTGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTATTAAAGGAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGCGCTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTTTGTCCGTATGTTGAAGGAGCAGAACTGTATCGCCTTCCCTGTACGCACCATTTTCATTGCGAATGCATCGGCCGTTGGCTTCAGACAAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 978 0.5194 MDQQQRHVSSGTTNPVLRFPTVRPLPFARLVAASRRRLFLSDCADRRSDDDGDGDGDSGECAYSRAVLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVYFEFRTGIRDSFSHTAYSIVKKLEPMNTLASSVWWIFGFYWIVVGDQALLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDILSLPMYRFSQSNSLVMVDDNKKQLIKGRVDSCNGSHMSALSLHPDDSECCICLCPYVEGAELYRLPCTHHFHCECIGRWLQTKATCPLCKFNILRGDTLV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1036 325 SUPERFAMILY RING/U-box 267 319 - -
Gso3g1036 325 ProSiteProfiles Zinc finger RING-type profile. 274 315 IPR001841 -
Gso3g1036 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 321 IPR013083 -
Gso3g1036 325 PANTHER RING-FINGER UBIQUITIN LIGASE 17 325 - -
Gso3g1036 325 Pfam Ring finger domain 273 315 IPR001841 -
Gso3g1036 325 PANTHER TARGET OF ERK KINASE MPK-1 17 325 - -
Gso3g1036 325 SMART ring_2 274 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1036 Gso-Chr3 35101100 35105418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1036 1 322 C3H Transcription Factor Family AT1G68070 41.739 4.23e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1036 - - gmx:100806994 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1036 3 35101100 35105418 Gso3g1036 3 35101100 35105418 ECH
Gso19g1048 19 38202837 38207387 Gso3g1036 3 35101100 35105418 GST