Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1021 ATGCCGCCGATGGGGAGGAAGCGAAAGGTAGCACCCAAATCTTCTCTATCCACCGAGCCACCTCTCAAGCAGCAACAACCAAAACCCGAAAATCCCCCTCAAGAATACGAAGAAGTCGAAGAGGAAGTTGAGGAAGAAGAGGTAGAGGAAGAGGTCGAAGAGGAAGAAGAAGAAGAAGAGGAGGACGAGGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAAACGACGTCGTCAAACAACAGCAGCAGCAACAGCAAGACGAAGACGACATCCCGATATCGAAACTTCTGGAACCGTTGGGCAAGGACCAGCTTCTGAACCTTCTTTGCGACGCGGCGGCGAAGCACCGCGATGTGGAGGAGAGGATCCGAAAGGCGGCGGATGGAGATCCGGTGCACCGGAAGATATTTGTCCACGGATTGGGCTGGGACACTACCGCCGGAACCCTAATTAGCGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGCCGCGGCGCGCAAAACGCGCTCAAGGAGCCGCAGAAGAAGATCGGCAACCGCATGACAGCGTGCCAGCTGGCATCCATCGGACCGGTTAGCAACCCGCCGCCGACGCCGATGGCGCCTTCAGCGGCTCCGTCGTCGTCGGTTTCGGAGTACACACAGAAGAAGATCTACGTGAGCAACGTCGGTGCGGACCTGGATCCGCAGAAGCTTCTCGCGTTTTTTTCACGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGCCACCGGAAAACCTAAGGGGTTCTGTTTGTTTGTTTACAGGAATCCGGAGAGTGCGAGGAGAGCGTTGGAAGAGCCTCATAAGGATTTCGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGGCCGGGAAATTTCAACAGCAGCAGCAGCACGGGAATGTTAATGCGCACGCCCAGCGGGCCCAGTTTCAGAGGAATAGTAATGTTGGTGCTAATGCTGCTGCGGGTTATGGTGGTGGTGGTTCGGCGGTGCAGCCGGGGCACTTGATGGCGCCGGCTGGGCCGGGGATTGGGTTTAATCCGTCGGCTGCTGCAGCTGCGCAGGCTGCGTTGAATCCGGCAATGGCACAGGCGTTGACGGCCCTGCTGGCGTCACAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTGCAGGGTCTGCGGTGCAGGGTGGTGGTTATAGTGCTCAGCCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTACAGGCTGCGTATCCGAATCAGAATCAGCAGATAGGGCAGGGTGGATCTGGAAGAGGGCAGTATGGTGGTGGAGCTGCGCCCTACATGGGGCACTAG 1470 0.5728 MPPMGRKRKVAPKSSLSTEPPLKQQQPKPENPPQEYEEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEEEEEEEENDVVKQQQQQQQDEDDIPISKLLEPLGKDQLLNLLCDAAAKHRDVEERIRKAADGDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGAQNALKEPQKKIGNRMTACQLASIGPVSNPPPTPMAPSAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYRNPESARRALEEPHKDFEGHILHCQKAIDGPKAGKFQQQQQHGNVNAHAQRAQFQRNSNVGANAAAGYGGGGSAVQPGHLMAPAGPGIGFNPSAAAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPAAGSAVQGGGYSAQPNISPGVVGGYGNQVGLQAAYPNQNQQIGQGGSGRGQYGGGAAPYMGH* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1021 489 SUPERFAMILY RNA-binding domain, RBD 126 217 IPR035979 GO:0003676
Gso3g1021 489 CDD RRM_RBM24_RBM38_like 239 314 - -
Gso3g1021 489 SMART rrm1_1 136 208 IPR000504 GO:0003723
Gso3g1021 489 SMART rrm1_1 240 312 IPR000504 GO:0003723
Gso3g1021 489 CDD RRM_RBM24_RBM38_like 135 210 - -
Gso3g1021 489 PANTHER GEO13361P1-RELATED 17 489 - -
Gso3g1021 489 Gene3D - 33 214 IPR012677 -
Gso3g1021 489 Gene3D - 225 359 IPR012677 -
Gso3g1021 489 Coils Coil 36 89 - -
Gso3g1021 489 MobiDBLite consensus disorder prediction 1 90 - -
Gso3g1021 489 PANTHER - 17 489 - -
Gso3g1021 489 SUPERFAMILY RNA-binding domain, RBD 222 331 IPR035979 GO:0003676
Gso3g1021 489 MobiDBLite consensus disorder prediction 465 489 - -
Gso3g1021 489 MobiDBLite consensus disorder prediction 35 77 - -
Gso3g1021 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 322 IPR000504 GO:0003723
Gso3g1021 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 203 IPR000504 GO:0003723
Gso3g1021 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 308 IPR000504 GO:0003723
Gso3g1021 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1021 Gso-Chr3 34851432 34854465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1021 226 333 C2H2 Transcription Factor Family AT2G19380 33.945 1.12e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1021 K12741 - gmx:100819802 768.074