Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1016 ATGGACTTGTACGGTTCCTTTTCCACCCCTTCAGATTGCTTACACATCGATGATTTTCTAGATTTCTCCAACATCACCACCACCACCACCGACACCCACCACCACTTTCCTCCGCCGCAAAACTCTCCATCAATCTCCCACGATCCCAATTTCTTCCTCAATTTCCCTTCCGTTCCGAGCGACGAAGCAGTGGAGCTGGAGTGGCTCTCCCAGTTCGTGAACGACGAGGCGACGTCGTTTCACAACATCCCACCACCCGCATCCATTGGATCCCACACGACGCCGTTTCTTTCCAACAATAACAGGAACGATAATAATAACGAATATCCCAAATCATCATCATCTTCACCGGTGTTGGCGGGAAAATCGAGAGCAAGAAGGGAAGGGTCGGTGACCGGCGACGGCGTGCGGCGCTGCAGCCACTGTGCGACGGATAAGACCCCGCAGTGGCGCACGGGACCGTTGGGGCCGAAGACGCTCTGCAACGCGTGCGGCGTGCGGTTCAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCCGCGAGCCCTACGTTCGTGATGACTCAGCACTCGAACTCGCACCGCAAGGTTATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCACCAGCAGCAAGAACAATGCTACCGTCACACTCACCACGACTTCAAAGTCTGCTGA 681 0.5639 MDLYGSFSTPSDCLHIDDFLDFSNITTTTTDTHHHFPPPQNSPSISHDPNFFLNFPSVPSDEAVELEWLSQFVNDEATSFHNIPPPASIGSHTTPFLSNNNRNDNNNEYPKSSSSSPVLAGKSRARREGSVTGDGVRRCSHCATDKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVMTQHSNSHRKVMELRRQKELLRHQQQEQCYRHTHHDFKVC* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1016 226 Gene3D - 133 214 IPR013088 GO:0006355|GO:0008270
Gso3g1016 226 MobiDBLite consensus disorder prediction 83 138 - -
Gso3g1016 226 ProSiteProfiles GATA-type zinc finger domain profile. 137 169 IPR000679 GO:0006355|GO:0043565
Gso3g1016 226 PANTHER GATA TRANSCRIPTION FACTOR 2 13 215 - -
Gso3g1016 226 SMART GATA_3 133 183 IPR000679 GO:0006355|GO:0043565
Gso3g1016 226 CDD ZnF_GATA 138 185 IPR000679 GO:0006355|GO:0043565
Gso3g1016 226 ProSitePatterns GATA-type zinc finger domain. 139 164 IPR000679 GO:0006355|GO:0043565
Gso3g1016 226 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 197 - -
Gso3g1016 226 Pfam GATA zinc finger 139 172 IPR000679 GO:0006355|GO:0043565
Gso3g1016 226 MobiDBLite consensus disorder prediction 84 120 - -
Gso3g1016 226 PANTHER GATA TRANSCRIPTION FACTOR 13 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1016 Gso-Chr3 34749828 34751316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1016 36 214 C2C2-Gata Transcription Factor Family AT2G45050 50.233 1.41e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso3g1016 GATA 7.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1016 - - gmx:100803262 471.47