Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1011 ATGGAATTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACAAAAGAGGAAAATGGAAACACTGGCGGTAACAGTAACAATAACAATATTGTTAATGTTTGGTATTCATCATGGGATGCTACTACTACAACTAATGCACCACACACCACCACGGCCGCGGAGGGCTACGCCGGCGGCGGTCACCGCCTCCATCACCACCAACTATACGGCGGCGAAGGGTGTCACGTGCAGGCGGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGCTACTAACGGTGATGATGCTAACAATGTTACTTCTCTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTTGCGGGTAACGATAAGAGAGCGAGGGGGTATTATGGTGGAGGAGGAGGTGGGGCTGGCGGTGGTGGTGGTGGTGGGAAATCGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATAAGCATTCCAAGGCACCCAAAGCTGTGGTCTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTAGTAGTGAAAATTGGCTATCTCATCATGCGGATTTCTCCACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGTGCTGCCCTAATCACTAGACAACAACAACTTGTTTATGATAGAGACTGGCCTCATGTTGTGCCCCACCATGATGCTGCAGTGGAAGAAGAAGAAGAAGACTTTGAAGACTTACAACAACAACAACAACCACCTGAGCCCAATTATTTTCCACAACAACATATGTTTCCACAGACATAA 1029 0.4917 MEFGENNMFSLNTHTKEENGNTGGNSNNNNIVNVWYSSWDATTTTNAPHTTTAAEGYAGGGHRLHHHQLYGGEGCHVQADPHLTCLHLGKRHYFEDATNGDDANNVTSLGNRHVCGGGGAGFVFAGNDKRARGYYGGGGGGAGGGGGGGKSAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSGSSSENWLSHHADFSTRCSAALRELIAENRAALITRQQQLVYDRDWPHVVPHHDAAVEEEEEDFEDLQQQQQPPEPNYFPQQHMFPQT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1011 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 25 335 - -
Gso3g1011 342 ProSiteProfiles Zinc finger SBP-type profile. 157 234 IPR004333 GO:0003677
Gso3g1011 342 MobiDBLite consensus disorder prediction 311 342 - -
Gso3g1011 342 Pfam SBP domain 160 233 IPR004333 GO:0003677
Gso3g1011 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 335 IPR044817 GO:0003677
Gso3g1011 342 MobiDBLite consensus disorder prediction 323 342 - -
Gso3g1011 342 SUPERFAMILY SBT domain 158 236 IPR036893 GO:0003677|GO:0005634
Gso3g1011 342 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g1011 342 Gene3D - 152 221 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1011 Gso-Chr3 34649208 34652985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1011 85 233 SBP-box Gene Family AT1G27360 47.651 1.13e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso3g1011 SBP 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1011 - - gmx:100816072 572.007