Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1009 ATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCTCTCCGGAAACGAAGACAGCTCCGCCGCGGGCTCCGACCAAACCCACCGTCAAATCTTCGACCACTATGCGTCCCACACACTCATCCCCGACCACTTCCTACACGCGCCAACGCACTCCACCGCCACCACCGCCGCCGCAGCCACCGTGGATTTCACCCATCACCACCACTTCACCCCGCAACCCCACCACCACAACCAAAACCACATGAACCACCACCACCACCATGCCTTCTTCGACCCACGCGCTTTTCATGGCGCGTCGAACACCTCTTACCCCCCACCCCATTCCATGCTCTCCCTTGACCCGCTACCTCACGTCAACGCAGTTGGGCCTGGGCACGGGCCCGGTTCCGGGCCAGGCGGACTTCTCCTTGTCCCAAAGTCTGAAGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGACTCAACCTCGGAGGACGGACTTACTTCTCATCCTCCGAGGATGACTTCGTGAGCCGGCTCTACCGTCGGTCTAGGCCCGTGGAACCGGGTTCGACTGCCTCGTCGAACTCGCCGCGGTGTCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACACAGCAACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAGTGTCGCCGCCAGACTATTTCCGGCAGAGGCCATACCAAAGCACGAACCCTTCATCTACTACTTCAAGCTCATTGTTTTTCTCAAGCGGGTAG 1011 0.5757 MLDYEWGNPSTIMLSGNEDSSAAGSDQTHRQIFDHYASHTLIPDHFLHAPTHSTATTAAAATVDFTHHHHFTPQPHHHNQNHMNHHHHHAFFDPRAFHGASNTSYPPPHSMLSLDPLPHVNAVGPGHGPGSGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPVEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQSSLENVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTNPSSTTSSSLFFSSG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1009 336 ProSiteProfiles Zinc finger SBP-type profile. 194 271 IPR004333 GO:0003677
Gso3g1009 336 Pfam SBP domain 197 270 IPR004333 GO:0003677
Gso3g1009 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 84 320 IPR044817 GO:0003677
Gso3g1009 336 SUPERFAMILY SBT domain 195 275 IPR036893 GO:0003677|GO:0005634
Gso3g1009 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 84 320 - -
Gso3g1009 336 MobiDBLite consensus disorder prediction 263 336 - -
Gso3g1009 336 MobiDBLite consensus disorder prediction 275 336 - -
Gso3g1009 336 Gene3D - 187 258 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1009 Gso-Chr3 34589722 34592672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1009 1 244 SBP-box Gene Family AT1G02065 44.402 2.66e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso3g1009 SBP 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1009 - - gmx:100802206 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0932 7 11136865 11139920 Gso3g1009 3 34589722 34592672 GST