Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1003 ATGCACCCACCCACTCATTCTTTCTATACCACACTAATCAAATTCTCAACCATGAGAAAACGTATCAATATGGAAAGTGATGCTGACTTCAATTCCTTTGCCACTTCTACTCCTTCAATCTTCTTTGACACCAACACTTCTAGCACATCCTCCTCCTCCTCCTCCTCCTCATCATCATCATCAACATCTCCAACCTCAAACAAAGATTCATGCACCAAAGAACACACCAAAACCCCTCAAAATGACTCAACCATTTCTCAAACCTCATTAGAAAATAAAAAGGACTCAAAAGAGTGCAAGAAGAGGCAGAGAGACAATAGCAACCAGAATCACCACCCTACTTATAGGGGTGTAAGGATGAGGAATTGGGGCAAATGGGTGTCCGAAATTCGCGAGCCGAGAAAGAAATCAAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCTAGAGCACATGATGTGGCTGCCTTAGCCATCAAGGGCCATTCAGCATACCTCAATTTCCCTGAATTGGCTCAAGAACTTCCAAGGCCTGCTAGCACATCTCCTAAGGACATTCAAGCTGCAGCATCAAAAGCTGCAAACACTGCCTTTGAGGTGGTTAAGCATTGTCAAATAACTGAAGAACAAGAACAAGAACAAAACCAAGCAGAACAAGAAACATCTTCAACTCTCTCAATGGACAACACTCAAGAGCCTTCAAGTTCTCACTCTACCAATGATGATGACACTTTGTTTGATCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTGCTCTTTTTCTTCTTGGCATTTGTGTGCAGTTGATAGTGGCTTTAGGCTTGAGGAATCATTTTTTTGGGAGAACTATTAG 864 0.4236 MHPPTHSFYTTLIKFSTMRKRINMESDADFNSFATSTPSIFFDTNTSSTSSSSSSSSSSSSTSPTSNKDSCTKEHTKTPQNDSTISQTSLENKKDSKECKKRQRDNSNQNHHPTYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPRPASTSPKDIQAAASKAANTAFEVVKHCQITEEQEQEQNQAEQETSSTLSMDNTQEPSSSHSTNDDDTLFDLPDLFPDGNNGLCSFSSWHLCAVDSGFRLEESFFWENY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1003 287 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Gso3g1003 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 287 - -
Gso3g1003 287 MobiDBLite consensus disorder prediction 91 109 - -
Gso3g1003 287 MobiDBLite consensus disorder prediction 211 245 - -
Gso3g1003 287 Gene3D AP2/ERF domain 114 172 IPR036955 GO:0003700|GO:0006355
Gso3g1003 287 MobiDBLite consensus disorder prediction 212 244 - -
Gso3g1003 287 MobiDBLite consensus disorder prediction 44 117 - -
Gso3g1003 287 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 Pfam AP2 domain 113 164 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 Coils Coil 90 110 - -
Gso3g1003 287 PANTHER ETHYLENE RESPONSE FACTOR 23 287 - -
Gso3g1003 287 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Gso3g1003 287 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1003 Gso-Chr3 34465615 34467006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1003 102 283 AP2-EREBP Transcription Factor Family AT2G44940 54.369 2.75e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1003 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1003 - - gmx:100801129 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0936 7 11249454 11259341 Gso3g1003 3 34465615 34467006 GST