Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1002 ATGTTTGGGCGTGGTGGACCAAGGAGGAGTGATAACTCCAAATATTATGATATTCTCGGGATTTCCAAAAATGCCAGTGAAGATGAAATCAAGAAGGCCTATAGAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGTTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGGATGGGGGGAGGAGGCTCGTTTCATAATCCATTTGATATATTTGAATCATTTTTTGGAGGAGCAAGCTTTGGTGGTGGTGGTAGTTCCCGAGGTAGAAGACAGAAGCATGGTGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGACGTTTATAATGGCACAACAAAGAAACTATCTCTTTCTAGAAACATATTATGCCCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACTGCTGGTAGGTGTTTTGGATGCAAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGGTGAGGTCATTAACGAGAGAGATAAATGTCCTCTGTGCAAAGGAAACAAGGTTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGCATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATTGTTTTTGTATTGCAAGTAAAGGATCACCCAAAGTTCAGAAGGGAGCAGGATGACCTCTATATTGATCACAATCTCAGCTTAACCGAGGCACTCTGTGGCTTCCAGTTTGCTGTCAAACATCTTGATGGTAGGCAACTATTGATCAAATCAAACCCTGGGGAAGTCATCAAACCAGGTCAATATAAAGCAATAAATGATGAGGGAATGCCACAACACAATAGGCCATTCATGAAGGGTCGCCTTTACATCCAGTTTAATGTTGATTTCCCAGACTCAGGGTTTCTTTCCCCTGACCAATGCCAGTTACTGGAAAAGGTGTTACCTCAAAAGAGCAGCAAGCATGTGTCAGACATGGAGCTGGATGATTGTGAGGAGACCACTTTGCATGATGTCAACTTTAAGGAGGAGATGAGACGAAAGCAGCAACAGCAATATCGCGAGGCATATGATGAAGATGATGATGAGCCATCTGGTCAACGAGTGCAATGTGCTCAACAGTAG 1263 0.4307 MFGRGGPRRSDNSKYYDILGISKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGSFHNPFDIFESFFGGASFGGGGSSRGRRQKHGEDVVHSLKVSLEDVYNGTTKKLSLSRNILCPKCKGKGSKSGTAGRCFGCKGTGMKITRRQIGLGMIQQMQHVCPDCRGSGEVINERDKCPLCKGNKVSQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKDHPKFRREQDDLYIDHNLSLTEALCGFQFAVKHLDGRQLLIKSNPGEVIKPGQYKAINDEGMPQHNRPFMKGRLYIQFNVDFPDSGFLSPDQCQLLEKVLPQKSSKHVSDMELDDCEETTLHDVNFKEEMRRKQQQQYREAYDEDDDEPSGQRVQCAQQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1002 420 CDD DnaJ_C 120 346 - -
Gso3g1002 420 Gene3D DnaJ domain 11 110 IPR036869 -
Gso3g1002 420 MobiDBLite consensus disorder prediction 388 420 - -
Gso3g1002 420 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Gso3g1002 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 217 IPR036410 -
Gso3g1002 420 Gene3D - 111 262 - -
Gso3g1002 420 Gene3D - 263 345 - -
Gso3g1002 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 420 IPR044713 GO:0006457|GO:0030544
Gso3g1002 420 PRINTS DnaJ domain signature 16 34 IPR001623 -
Gso3g1002 420 PRINTS DnaJ domain signature 47 67 IPR001623 -
Gso3g1002 420 PRINTS DnaJ domain signature 67 86 IPR001623 -
Gso3g1002 420 SMART dnaj_3 13 67 IPR001623 -
Gso3g1002 420 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Gso3g1002 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 353 IPR008971 GO:0006457|GO:0051082
Gso3g1002 420 SUPERFAMILY Chaperone J-domain 10 110 IPR036869 -
Gso3g1002 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 115 274 IPR008971 GO:0006457|GO:0051082
Gso3g1002 420 Gene3D - 149 215 - -
Gso3g1002 420 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Gso3g1002 420 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Gso3g1002 420 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Gso3g1002 420 PANTHER CHAPERONE PROTEIN DNAJ A6 8 420 - -
Gso3g1002 420 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Gso3g1002 420 MobiDBLite consensus disorder prediction 388 412 - -
Gso3g1002 420 Hamap Chaperone protein DnaJ [dnaJ]. 11 394 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gso3g1002 420 CDD DnaJ 15 64 IPR001623 -
Gso3g1002 420 Pfam DnaJ domain 14 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1002 Gso-Chr3 34434506 34439012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1002 9 74 C2H2 Transcription Factor Family AT1G74250 45.333 2.38e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0937 7 11316905 11321285 Gso3g1002 3 34434506 34439012 GST