Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0986 ATGAGTGAGAAAGATGATGGCTTGGGTTTGGGGTTGAGTTTGAAGTTGGGATGGGGAGAAAATGATGATGATAATAATAATAATCTAAATCATCATCAACAACAACAATACCCTTTCTACGTGCACAAGCCTCCTCAATCGGTTCCAAACCAAAGGGCTTCCTTCAATAACTTGTTCCATTTTCATGATCGGAGCTCCGAGACGCGGTCGTTCCTCCGCGGAATAGACGTGAATCTGCCACCTCCGCCCCCATCGGCGGTGGTCGACGACGAGAACGCGGTGTCATCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGCAACGGAGACGAAAACGAGAGAACATCGAGTTCTCGCGGCGGCGGAAGCGACGACGATGATGGCGGAGCTTGCGGCGGAGACGGCGACGGCGAAGCGTCGAGGAAGAAGCTGAGGTTGTCCAAGGAACAGGCATTGGTGCTGGAAGAAACATTCAAGGAACACAACAGTCTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGGCAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAACTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTTTACATGAACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCGTGTGAGCGTGTTGCCGTCTCATCCACATCCTTTTCCTCATCGGCCACCATGCCCTCTGCCCTGCCTCCAGCTAATCTCAACCCGGCAGGCCCTACCATCCAGCGGCCGGTGCCCGTCAACCCTTGGGCAGCAATGTTGAATCAACACCGTGGCCGGCCATAA 933 0.5209 MSEKDDGLGLGLSLKLGWGENDDDNNNNLNHHQQQQYPFYVHKPPQSVPNQRASFNNLFHFHDRSSETRSFLRGIDVNLPPPPPSAVVDDENAVSSPNSTISSISGKRSEREGNGDENERTSSSRGGGSDDDDGGACGGDGDGEASRKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELRALKLSPQLYMNMNPPTTLTMCPSCERVAVSSTSFSSSATMPSALPPANLNPAGPTIQRPVPVNPWAAMLNQHRGRP* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0986 310 MobiDBLite consensus disorder prediction 1 35 - -
Gso3g0986 310 Pfam HD-ZIP protein N terminus 1 112 IPR006712 GO:0005634
Gso3g0986 310 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Gso3g0986 310 SUPERFAMILY Homeodomain-like 129 204 IPR009057 -
Gso3g0986 310 Gene3D - 138 208 - -
Gso3g0986 310 MobiDBLite consensus disorder prediction 82 149 - -
Gso3g0986 310 PANTHER - 4 304 - -
Gso3g0986 310 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Gso3g0986 310 MobiDBLite consensus disorder prediction 20 35 - -
Gso3g0986 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 304 - -
Gso3g0986 310 MobiDBLite consensus disorder prediction 109 127 - -
Gso3g0986 310 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Gso3g0986 310 Coils Coil 209 239 - -
Gso3g0986 310 SMART HOX_1 145 207 IPR001356 GO:0003677
Gso3g0986 310 MobiDBLite consensus disorder prediction 91 108 - -
Gso3g0986 310 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Gso3g0986 310 CDD homeodomain 147 204 IPR001356 GO:0003677
Gso3g0986 310 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0986 Gso-Chr3 34042030 34045814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0986 30 302 Homeobox Transcription Factor Family AT3G60390 61.672 2.56e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso3g0986 HD-ZIP_N 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0986 K09338 - gmx:100798480 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0954 7 11722188 11725996 Gso3g0986 3 34042030 34045814 GST
Gso3g0986 3 34042030 34045814 Gso18g2070 18 53662724 53666676 PCT
Gso3g0986 3 34042030 34045814 Gso9g1984 9 44262559 44266182 PCT