Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0967 ATGAACAATTTCAACACCACTCTTGAATCCGATGATTTCTCTCTTCTAGAATCCATTCAACGTTACCTCCTTGATGATAACGAAGATTTCAACGCTCTAACGGAGGTTTTAGCAACACCCAATAATGTCGATGCCGTTAACTCTCCATTATCTTTGTCAGAACATGCAACAACGACTGCCACGGCGGCGCGTGGGGCTTCAGTTGCGGTGGCGCGTGCTAGCCACGCCCGTAGCCAAAATTATAAGGGGGTGAGGCGTAGGCCTTGGGGCAAGTTTGCAGCTGAGATAAGGGACCCGAATAAGAACGTGAGAGTGTGGCTTGGGACTTACGAGTCGGCTGAGGATGCGGCTCTGGCTTATGATCGAGCCGCTTTTGAAATGCGTGGCTCGAAAGCTAAGCTCAATTTTCCTCATTTAATTGGGTGCAATGATGCCGAGCCGAGCCAAAGACAGTAA 456 0.4934 MNNFNTTLESDDFSLLESIQRYLLDDNEDFNALTEVLATPNNVDAVNSPLSLSEHATTTATAARGASVAVARASHARSQNYKGVRRRPWGKFAAEIRDPNKNVRVWLGTYESAEDAALAYDRAAFEMRGSKAKLNFPHLIGCNDAEPSQRQ* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0967 151 CDD AP2 79 139 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 PANTHER DNA-BINDING DOMAIN 51 139 IPR044808 GO:0003700|GO:0009873
Gso3g0967 151 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 51 139 - -
Gso3g0967 151 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Gso3g0967 151 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Gso3g0967 151 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0967 Gso-Chr3 33851950 33852650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0967 24 147 AP2-EREBP Transcription Factor Family AT2G44840 54.962 1.79e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso3g0967 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0967 K09286 - gmx:102661516 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0965 7 11899199 11899958 Gso3g0967 3 33851950 33852650 GST