Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0966 ATGGCCACCACGATATCTTGTGATTTCTCTTCAGTGGAATCTATTCAACACTATCTTCTTGAGCTTGAACACGATTCCAACACACTCATGAACGCTTCCAATCACGAAATTTGCTATTCTCCAACGTACAATTCATTCCCAAGCTCTACTACGTTCCGCTTGGAAGGTGTCCATGATGCAGAAGGGTCGTTAGCATGCAAAAGAGAACACCCTAAGGTGGAGCGTGAAGTTCACGCGCCACCAGCATGGAAGCGTTACCGGGGTGTGAGGCGTAGACCTTGGGGCAAGTTCGCGGCGGAAATAAGAGATCCGAAGAAGAATGGTGCTAGGATATGGCTTGGGACTTACGAAACTGAAGAAGAAGCGGGTTTAGCTTATGATGGAGCTGCTTTTGAGATGCGTGGCAGCAAAGCTAAGTTAAATTTTCCTCACCTCATTGGTTCTCACGCGCCTCTGAAGCCGATAAGAGTATTGACAAAGACTTTGAAGCAAAATTTGCTAGAGTCTGATTTATCATACTCATCGGCTTCAGAGACGCAAGAGTTAAAGAAGAGAAAAAATTTGGCCGACTTGTTGAACAGGTTGGCCAAGAATAGGAAACAAGTGGAGGTGTTTGAAATGAGTTTACATGCATCAAATGATGTCAATGTTGATCAATGGTGGAGTAATTAA 672 0.4435 MATTISCDFSSVESIQHYLLELEHDSNTLMNASNHEICYSPTYNSFPSSTTFRLEGVHDAEGSLACKREHPKVEREVHAPPAWKRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDGAAFEMRGSKAKLNFPHLIGSHAPLKPIRVLTKTLKQNLLESDLSYSSASETQELKKRKNLADLLNRLAKNRKQVEVFEMSLHASNDVNVDQWWSN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0966 223 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 200 - -
Gso3g0966 223 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Gso3g0966 223 CDD AP2 84 145 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700|GO:0006355
Gso3g0966 223 PANTHER DNA-BINDING DOMAIN 1 200 IPR044808 GO:0003700|GO:0009873
Gso3g0966 223 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0966 Gso-Chr3 33847900 33848984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0966 85 157 AP2-EREBP Transcription Factor Family AT2G44840 78.082 2.28e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g0966 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0966 K09286 - gmx:100527194 442.58