Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0964 ATGGCTGCTACAACATCTTGTGATTTTTCTTCGTTGGAACCTCTTCAACACTATCTGCTTAAACATGGTTCCAAACACTTGGTCTCTAATGGCGTGGAGAGCATCAATGATGCAAAGAAATTGTCAGAGTGCAAAAGGGATCAGCCTAGGGCATCACCTGAAGTTCACGCGCCACCCAAATGGAAGCACTACCGTGGCGTGAGGCGAAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACCCGAACAAAAACAGTGCTAGGGTTTGGCTTGGGACTTATGTTACTGAAGAAGAAGCAGGTTTGGCTTATGATAGAGCAGCTTTTAAGATACATGGCAGCAAAGCTAAGCTGAATTTTCCTCATCTCATTGGCTCTGACGTATCATTGTCAGAGCCAATGAGAGTGGTGGCGACAAACTCACATGAGCCTTGTTTGTTGCCATTGGAGTCACAAGGATCAAAGAAAAAGAAGAACCTAGTTGATTTGTTGAATAGGTTGGCCAAAAATAGAAAAAGGGTTGGGTTTAAAAGTTCTGAGATCTCAGCTAAAATTTATGCTTAG 564 0.4468 MAATTSCDFSSLEPLQHYLLKHGSKHLVSNGVESINDAKKLSECKRDQPRASPEVHAPPKWKHYRGVRRRPWGKFAAEIRDPNKNSARVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPHLIGSDVSLSEPMRVVATNSHEPCLLPLESQGSKKKKNLVDLLNRLAKNRKRVGFKSSEISAKIYA* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0964 187 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Gso3g0964 187 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gso3g0964 187 PANTHER DNA-BINDING DOMAIN 1 172 IPR044808 GO:0003700|GO:0009873
Gso3g0964 187 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Gso3g0964 187 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Gso3g0964 187 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 172 - -
Gso3g0964 187 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Gso3g0964 187 CDD AP2 62 123 IPR001471 GO:0003700|GO:0006355
Gso3g0964 187 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Gso3g0964 187 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0964 Gso-Chr3 33799186 33799915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0964 56 136 AP2-EREBP Transcription Factor Family AT2G44840 73.171 1.60e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g0964 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0964 K09286 - gmx:100793710 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0968 7 11915093 11916078 Gso3g0964 3 33799186 33799915 GST
Gso3g0964 3 33799186 33799915 Gso18g1801 18 50481759 50482610 PCT