Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0962 ATGGAGAATAATACAATATATTGCGATCTTTCTCCATTGGAATCTGTTCAACACTATCTTCTAGAGCATGAAAATGATTCCAACACTCTCTCCAATGTCTCCAACCACGAAATCTGCTTGGAAGGTGTCCACGACTCAAAGGGTTTATTTTCATGCAAAAGTGAACAGCATGTGGACGCGCGTGAATTTCACACGCATCCGGTATGGAAGCATTACCGGGGCGTGAGGCGGAGGCCGTGGGGAAAGTTCGCGGCGGAGATATGGGTCCCAAAGAGCAAAGGTGGAAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCAGGTTTAGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGCAAAGCAAAGTTGAATTTTCCTCACCTGGTTGGTGAGCACGTATTTCTGGAGCCGAAGAGAATTAGGAAGGCTTCAAAGCAAAATTCATCGAAGCCTGATCAGTCATTCTCTCCGACTCCAGAGACACAAGGGTCAAAGAAGAGGAAGAAGTTGGGTGATTTGTTGAACAGGTTGGCTAAGAGTAGAGGGCAAATGCAGGTGTTTGAAATGGGTTCACATGCAAATTAA 594 0.4562 MENNTIYCDLSPLESVQHYLLEHENDSNTLSNVSNHEICLEGVHDSKGLFSCKSEQHVDAREFHTHPVWKHYRGVRRRPWGKFAAEIWVPKSKGGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLVGEHVFLEPKRIRKASKQNSSKPDQSFSPTPETQGSKKRKKLGDLLNRLAKSRGQMQVFEMGSHAN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0962 197 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Gso3g0962 197 MobiDBLite consensus disorder prediction 145 174 - -
Gso3g0962 197 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Gso3g0962 197 PANTHER DNA-BINDING DOMAIN 5 185 IPR044808 GO:0003700|GO:0009873
Gso3g0962 197 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Gso3g0962 197 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Gso3g0962 197 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Gso3g0962 197 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Gso3g0962 197 MobiDBLite consensus disorder prediction 150 164 - -
Gso3g0962 197 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 5 185 - -
Gso3g0962 197 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Gso3g0962 197 CDD AP2 70 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0962 Gso-Chr3 33758117 33759174 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0962 71 144 AP2-EREBP Transcription Factor Family AT2G44840 74.324 2.66e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g0962 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0962 K09286 - gmx:100793895 412.535