Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0959 ATGACCAATGATGTTTCTTGTGTACAATCGTACGAGCTTGAACATGATTCCCACACTCTCATGAATGTTTCCGACCACCCAAACAATAATCCGTTTCAAAACCCTACTCATATCGATGACGTGATTCAATTATTTGCATGCGACACGGAAGCGCCTTTGGTAGCGCGTGAGGTGTACGCGCCTCGGAAATGGAAGCGCTTCAGGGGCGTGAGAAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATATGGGATCCAAAGAAGAAGAATGGAAGGGTTTGGCTCGGGACGTATGAGACTGAAGAGGAAGCTGGTTTAGCTTATGATAGAGCTTGTTTCAAGATGAGAGGTAGTAAAGCAAAGTTGAATTTTCCACACCTAATTGGATCTCACGCGCCGCCTGAGAGAGTGAGTGTGGTGGCCGCACGGAAGCCGAACTCGCCAGAGCCTTGTTTCCTGCCTTCCCCGCCGCCGGTGACCGAAGATAGCTCACAGCCACAAGGGTTGAAGAAAAGGAGGAACCTAGCTGATTTACTTAATAGGTTAGCCAAGAACAGAAGCCAAAGTATGAGTTTAAATTGA 579 0.4922 MTNDVSCVQSYELEHDSHTLMNVSDHPNNNPFQNPTHIDDVIQLFACDTEAPLVAREVYAPRKWKRFRGVRRRPWGKFAAEIWDPKKKNGRVWLGTYETEEEAGLAYDRACFKMRGSKAKLNFPHLIGSHAPPERVSVVAARKPNSPEPCFLPSPPPVTEDSSQPQGLKKRRNLADLLNRLAKNRSQSMSLN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0959 192 MobiDBLite consensus disorder prediction 142 170 - -
Gso3g0959 192 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Gso3g0959 192 PANTHER DNA-BINDING DOMAIN 7 187 IPR044808 GO:0003700|GO:0009873
Gso3g0959 192 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gso3g0959 192 CDD AP2 65 126 IPR001471 GO:0003700|GO:0006355
Gso3g0959 192 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Gso3g0959 192 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Gso3g0959 192 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso3g0959 192 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Gso3g0959 192 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 7 187 - -
Gso3g0959 192 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0959 Gso-Chr3 33681380 33682178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0959 59 129 AP2-EREBP Transcription Factor Family AT2G44840 76.389 1.12e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso3g0959 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0959 K09286 - gmx:100792115 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0959 3 33681380 33682178 Gso18g1802 18 50488084 50488578 PCT
Gso3g0959 3 33681380 33682178 Gso9g1992 9 44331734 44332607 PCT