Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0914 ATGCCTCCGAAGACGGCGAAGCGAGGGTCCGCGTCGAGCGCCTCGAAGAGGGGTGGCAGAGGTGGCAGGGGAACCCCGAAGGCTGCACAGAACCAACAGCAGCATGAAACTGCGGAGGAGACAGTGAAGGTTGAAGAGAAACAACAACCCGTGGTTGTTGTTGCTGCTGAGGAGGAACAGCAGAAGGTGGTGGTGGAAAAAGAGATTCCTGCTGTTGAAGAGAACGAGTCCGCTGTGGTTATTGAGGATAAGGCTATTGACATGAATCAAATGGCTCCGGAGGCTGTGGAAGAAACGTCCCATGCGGCTAGTGGGTTGAGCTTGGTGAAAAATGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTAGGAAATGAAGTAGAGGAAGAAGAGGCTGAAGATAATGTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAAGTCGAAGATGTTCATGACGAACTTGAGGGTGAAGAGGAGCATGAGCATGCTGGTGAGGAGCGTGAGCATCCAGACTTTGCTGACGTTGAGGAAGAGGAACACCGAGAAGTCGTGAAGGAGAGGCAAAAGCGGAAAGAATTTGAAGTTTTTGTTGGGGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGCTTTTGGTGAAGTTGGGGTGGTTACAGAGGTCAGGTTGATGATGAACCCTCAAACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTGACTCCTAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGTTGAAGCATTATGGAGTCACCAATGTTGAGGATTTAACTTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGATTTGCGTTTTTGGAATTTCCTTCTCGTTCTGAAGCTATGGATGCCTTTAAGCGACTGCAGAGGAGGGATGTTGTATTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCCTTTATTGATCCGGGTGATGAAATTATGGCGCAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTCCGGGATCTTCTCAGGAAATATGGTGAGATTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCTCGGAGGAAGGACTACGGGTTTGTGACATTTGGCTCACATGATGCTGCCGTAAAATGTGCTGATAGTATTACAGGCACAGAGTTGGGTGAGGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCTAGACCACTCCAGAGAGGCCGCGGAAAACACATTAGTCGTGGGGACTATCGTTCTAGTCGGGGATCTGGAATGATGACGCGGCCTTCATGGAGCCGACCTGCACCTCGTTCTTTTCCTTCTCGTAGTGTAAGAGGAGTTGGAAGTCGTGCTCCACCTGTCAGACCAGTTAGTGTGAGAGATAGACGCCCTATGATGTCCATACCTGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATATACCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGCTCAAGGGTTGCTTCTGAAAGACGAACATCTTACAGGGATTATCCTGCTCGTGGTCCTGGCTACACCGAGCTCCCTAGAAGCACATCTCGTGCTGCACCAAGGAGAGGCTATGTGGATGATGGGTATGGCCAGAGATTTGAGAGGGCTCCTCCTCCTCCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACGTCCCCGAGATTATGATGCTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCACGATATGCTGATACTGGTGCTCGCCAATCAAGAGCTCGACTGGACTATGACTATGGCGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGATATGGTGGTGGCAGCAGAAGTTCTATTTCCAGTCAAGATTCACATGGGTTGTATAGCAGTCGGCAGGGCATGAGTTATGGAGGAGGTTCTTTTGGTAGTGGTGATGTTGGTGGCATGTATTCATCAAGTTATGGTGGTGATTACATTTCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAATGTATTCTGGAAGGGGTGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGCGGATCAGGATCTTATTATTGA 2451 0.4708 MPPKTAKRGSASSASKRGGRGGRGTPKAAQNQQQHETAEETVKVEEKQQPVVVVAAEEEQQKVVVEKEIPAVEENESAVVIEDKAIDMNQMAPEAVEETSHAASGLSLVKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNVGEEEGDTGEEEVEDVHDELEGEEEHEHAGEEREHPDFADVEEEEHREVVKERQKRKEFEVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSSRGSGMMTRPSWSRPAPRSFPSRSVRGVGSRAPPVRPVSVRDRRPMMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYGRREDIPPPRSRVAVDYGSRVASERRTSYRDYPARGPGYTELPRSTSRAAPRRGYVDDGYGQRFERAPPPPPPPHLSYREGRPRDYDALSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGGSRSSISSQDSHGLYSSRQGMSYGGGSFGSGDVGGMYSSSYGGDYISRGSDVGGSSYSSMYSGRGVGGGSSYMGGGGSGSYY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0914 816 MobiDBLite consensus disorder prediction 731 752 - -
Gso3g0914 816 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 816 - -
Gso3g0914 816 MobiDBLite consensus disorder prediction 108 124 - -
Gso3g0914 816 MobiDBLite consensus disorder prediction 489 677 - -
Gso3g0914 816 SUPERFAMILY RNA-binding domain, RBD 227 310 IPR035979 GO:0003676
Gso3g0914 816 Gene3D - 147 312 IPR012677 -
Gso3g0914 816 MobiDBLite consensus disorder prediction 125 194 - -
Gso3g0914 816 MobiDBLite consensus disorder prediction 93 224 - -
Gso3g0914 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Gso3g0914 816 Gene3D - 313 395 IPR012677 -
Gso3g0914 816 CDD RRM_SF 314 381 - -
Gso3g0914 816 Coils Coil 106 129 - -
Gso3g0914 816 SUPERFAMILY RNA-binding domain, RBD 311 476 IPR035979 GO:0003676
Gso3g0914 816 MobiDBLite consensus disorder prediction 584 598 - -
Gso3g0914 816 CDD RRM_SF 234 305 - -
Gso3g0914 816 Gene3D - 399 516 IPR012677 -
Gso3g0914 816 Coils Coil 28 48 - -
Gso3g0914 816 MobiDBLite consensus disorder prediction 195 224 - -
Gso3g0914 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 396 IPR000504 GO:0003723
Gso3g0914 816 CDD RRM_SF 411 485 - -
Gso3g0914 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Gso3g0914 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 379 IPR000504 GO:0003723
Gso3g0914 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 476 IPR000504 GO:0003723
Gso3g0914 816 MobiDBLite consensus disorder prediction 1 45 - -
Gso3g0914 816 Coils Coil 55 75 - -
Gso3g0914 816 PANTHER RNA RECOGNITION MOTIF 1 816 - -
Gso3g0914 816 SMART rrm1_1 233 306 IPR000504 GO:0003723
Gso3g0914 816 SMART rrm1_1 313 392 IPR000504 GO:0003723
Gso3g0914 816 SMART rrm1_1 410 485 IPR000504 GO:0003723
Gso3g0914 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 409 491 IPR000504 GO:0003723
Gso3g0914 816 MobiDBLite consensus disorder prediction 732 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0914 Gso-Chr3 32735682 32742358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0914 234 505 Eukaryotic Initiation Factors Gene Family AT4G34110 23.051 4.40e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0914 - - gmx:100779340 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0914 3 32735682 32742358 Gso18g1830 18 50852722 50859003 PCT
Gso3g0914 3 32735682 32742358 Gso9g2013 9 44593783 44600461 PCT