Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0899 ATGTCGTCGTCGTCCATGAAGAAGAATTGGGTTCGCGGAGAGTCTCTTGGTAGTGGCAGCGCCGCCACCGTCAACATAGCCATACCAACAAACCCTTCCACGCACAATTTTCCTTCACCCACCGCCGTCAAATCCTCCCTTTTCCTAACCTCGTATTCGCTCAAAACCGAGAAGGACGTCCTCGACATTCTTGGACCTTCCCCAAACATCATTAAATGTTACGGCAACGATTGCACCGTCGAAAACGGCAAGAGATACTACAACGTTTTTCTCGAATACGCCGCGGGCGGTTCCCTCGCCGATCAACTCAAAAAGTACGGCGGGAGGTTCCCGGAGGCTTGCGCTCGACAATGCACAAAATCCATCTTGGAGGGTCTGAAGCACATTCACTCCAAGGGCTACGTCCACTGCGATGTGAAGCCTCAGAACATTCTTGTCTTCGACAATGGTGTTGTTAAGATCGCGGATTTGGGGCTGGCCAAGAGGAGAGGGGAGATAAATAGAGAGTACGTGTGCAGGGGCACGCCGATGTATATGTCACCGGAATCGCTGACCGATAACGTGTACGAGTCGCCGGTAGATATATGGGCTTTGGGCTGCACCATCGTGGAGATGATCACAGGAGAACACGCGTGGTACGTTGGAAGCTGCGAGAATACTTGGACGTTGATGAATCGAATTGGGATAGGAGAAGAATTGCCCAAGATTCCACAAGAGTTATCACAACAAGGGAAGGATTTTCTTGGCAAGTGTCTTGTTAAGGATCCAAACAAGAGGTGGACTGCTCACATGCTTTTGAATCACCCTTTCATCAAGAACCCATTGCCCCAGCCGTTACCAAGAAAAACTGATAGACCTGCATGCATGCCAAAAGGAATACCTTGCACTCATCAGGCTAAAATGGGAGAAGGAAAAGATTTTCTTGACAAGTGTCCCGGTAAGGATCCAAAGAAGGGGTTGACTGCTGAGATGCCTTTGAACCACCCTTTCGTCAGGAAGCCATTGCCGCCCACGTTACCAAGGAAAAGTGCTACGCCCGCATGCATGCCAAAAGGGATACCTTGCACTCATCAGGATAAAATGAGAAGACACTGCATAAAGGTGGTGGTGATGAAGAGAAAGAGCACACTTTCCCGGTTGTGTGAGACAAAGTGGTGGAACAACCTATGCCAACATGGGACAAGAAGAAAAACCAAGCAGATCAAGAGTTCTTGTGTTGTGTTTCATGACATGGAGGGTGTGCAACTATCTTCCATGATTGGAAAGGACAGCAACATTAATCATCCAAGGATTTTCAGCTACGCTGAGCTCTACATAGGATCAAGGGGTTTCTCTGAGGAGGAGGTTCTAGGAAGTGGAGGGTTTGGCAAAGTGTACAGAGCTGTTAATTAA 1392 0.4864 MSSSSMKKNWVRGESLGSGSAATVNIAIPTNPSTHNFPSPTAVKSSLFLTSYSLKTEKDVLDILGPSPNIIKCYGNDCTVENGKRYYNVFLEYAAGGSLADQLKKYGGRFPEACARQCTKSILEGLKHIHSKGYVHCDVKPQNILVFDNGVVKIADLGLAKRRGEINREYVCRGTPMYMSPESLTDNVYESPVDIWALGCTIVEMITGEHAWYVGSCENTWTLMNRIGIGEELPKIPQELSQQGKDFLGKCLVKDPNKRWTAHMLLNHPFIKNPLPQPLPRKTDRPACMPKGIPCTHQAKMGEGKDFLDKCPGKDPKKGLTAEMPLNHPFVRKPLPPTLPRKSATPACMPKGIPCTHQDKMRRHCIKVVVMKRKSTLSRLCETKWWNNLCQHGTRRKTKQIKSSCVVFHDMEGVQLSSMIGKDSNINHPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYRAVN* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0899 463 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 302 344 - -
Gso3g0899 463 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 9 273 - -
Gso3g0899 463 SUPERFAMILY Protein kinase-like (PK-like) 426 463 IPR011009 -
Gso3g0899 463 SUPERFAMILY Protein kinase-like (PK-like) 7 292 IPR011009 -
Gso3g0899 463 Gene3D Transferase(Phosphotransferase) domain 1 2 291 - -
Gso3g0899 463 ProSiteProfiles Protein kinase domain profile. 10 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0899 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Gso3g0899 463 Pfam Protein kinase domain 12 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0899 463 SMART serkin_6 10 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0899 463 CDD STKc_MAPKKK 9 271 - -
Gso3g0899 463 Gene3D Phosphorylase Kinase; domain 1 415 463 - -
Gso3g0899 463 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 9 273 - -
Gso3g0899 463 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 302 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0899 Gso-Chr3 32325311 32330929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0899 10 271 MAP Kinase Kinase Kinase AT4G36950 53.208 2.42e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso3g0899 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0899 - - gmx:100816949 969.148