Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0896 ATGGATGAGTCATGGCTAAAATGGGTTTCTATTTTGGACACTAATGACTATCATTTATTCAGTGAATATGACATGAACTCTGTCGAGGAACAATTGGAGGGAGAGAATTCAGTGGATCCTGGTGAACTCTCATGGGAAAATCACTCTTATTCATATCTCACTAAAGAAAGCACCACCCTTTTGAGCAATTCTTCATCTTTGGAAGAGATCAACACTGGCTTTGATATGACAAGTCTCAAACAAGATGCTTCTCCACAGAAACCGAAGTCTTGCATTCTGTCTTTTGAGGATTCCACTTTAGTGCCAATTAATCCCAAGAAAACATGCCAAATATATGATCATGGTGAACATTCAAAGGAGACACAAGAAAAGCCACACAATAGAAAACCCCTCAAGAGGGGTAGAAGCTTTTCTCAGACACTTGATCACATATTGGCTGAAAGAAAAAGGAGAGAGAATATCAGCAGAATGTTCATAGCTCTTTCAGCACTTATTCCAGACTTGAAAAAGATGGACAAGGCTTCTGTCCTTAGCAACGCTATAGAGTATGTGAAATATCTTCAGCAGCATGTGAAAGATTTGGAACAAGAGAACAAGAAGAGAAAGACGGAATCCTTAGGATGTTTCAAAATAAACAAAACCTGTGATGATAAACCTATAAAGAAATGTCCCAAAGTTGAAGCAAGAGTCTCAGGAAAAGATGTTCTCATCAGAGTAACGTGTGAGAAGCAAAAGGACATTGTACTTAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTGCATAGTGTGTAGCAATGTCTTACCTTTTGGGAATTCCGCTCTCAGCATTACCAGCATTGCTATGATGGACCATGAATTCAGCATGACAGTGGACACGTACGACCTAGTGAAAATGTTGACTGAGGAATTGTTGGAGTGCTGTAAATTGCAACGATAA 939 0.394 MDESWLKWVSILDTNDYHLFSEYDMNSVEEQLEGENSVDPGELSWENHSYSYLTKESTTLLSNSSSLEEINTGFDMTSLKQDASPQKPKSCILSFEDSTLVPINPKKTCQIYDHGEHSKETQEKPHNRKPLKRGRSFSQTLDHILAERKRRENISRMFIALSALIPDLKKMDKASVLSNAIEYVKYLQQHVKDLEQENKKRKTESLGCFKINKTCDDKPIKKCPKVEARVSGKDVLIRVTCEKQKDIVLKLLAKLEAHNLCIVCSNVLPFGNSALSITSIAMMDHEFSMTVDTYDLVKMLTEELLECCKLQR* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0896 312 MobiDBLite consensus disorder prediction 115 135 - -
Gso3g0896 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Gso3g0896 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Gso3g0896 312 Coils Coil 184 204 - -
Gso3g0896 312 SMART finulus 144 193 IPR011598 GO:0046983
Gso3g0896 312 Pfam Helix-loop-helix DNA-binding domain 143 188 IPR011598 GO:0046983
Gso3g0896 312 PANTHER BHLH TRANSCRIPTION FACTOR 1 310 - -
Gso3g0896 312 Gene3D - 138 206 IPR036638 GO:0046983
Gso3g0896 312 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0896 Gso-Chr3 32272958 32276414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0896 120 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.788 1.99e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g0896 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0896 - - gmx:100815351 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1001 7 13273601 13277444 Gso3g0896 3 32272958 32276414 GST