Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0893 ATGCTCCGCCGCGCAACCTCCTCCCTCCTCACCGGCGCCTCCCGCCGCCGCCTCTCCTCCGACGTGCCGGCGACCCCCGCCGCGGATTCCGCCTTCGCGGAGGCGTGGAAGAAAGTGAGCCCCAACATCGACCCGCCGAAGACGCCGCTGGCGTACATGAAGCCCCGACCACCCACTCCCTCGGCTCTCCCTTCCAAGCTCACAGTCAACTTCGTCTTGCCCTACTCTTCTCAATTGGCCGCAAAAGAGGTTGATATGGTCATTGTACCAGCAACAACTGGGCAGATGGGTGTTCTCCCAGGACATGTAGCAACAATTGCAGAGTTGAAACCTGGTGTCTTATCTGTACATGAAGGGAACGATGTGACCAAGTACTTTGTCAGCAGTGGCTTTGCATTCATCCATGCAAACTCTGTTGCTGATATAATAGCTGTTGAGGCTGTGCCGGTGGACCGAATTGATGCGAATCTAGTCCAGAAGGGTCTTCAAGATTTCACCCAGAAGCTGAACTCAGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGGGTTGATGTCCATAGTGCTCTGAACTCTGCTCTTACAGGCTAA 594 0.5488 MLRRATSSLLTGASRRRLSSDVPATPAADSAFAEAWKKVSPNIDPPKTPLAYMKPRPPTPSALPSKLTVNFVLPYSSQLAAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFIHANSVADIIAVEAVPVDRIDANLVQKGLQDFTQKLNSATTDLEKAEAQIGVDVHSALNSALTG* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0893 197 MobiDBLite consensus disorder prediction 1 24 - -
Gso3g0893 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 3 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
Gso3g0893 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Gso3g0893 197 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 78 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
Gso3g0893 197 Coils Coil 162 182 - -
Gso3g0893 197 MobiDBLite consensus disorder prediction 1 15 - -
Gso3g0893 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
Gso3g0893 197 Gene3D - 154 196 - -
Gso3g0893 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Gso3g0893 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Gso3g0893 197 PANTHER ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL 3 197 - -
Gso3g0893 197 Gene3D - 57 153 IPR036771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0893 Gso-Chr3 32092612 32096090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0893 16 197 Primary Pumps ATPases AT5G47030 74.725 1.30e-101 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0893 K02134 - gmx:100780778 384.03