Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0889 ATGGAAGACTCGTGGGAGAATTGGATTTCTTCTTTGGAAATGGGTGAAGACAACAATTCCAATGGTCAATCTCACACTAACTCACTGGATCGGGATAAGCTCCTCACTGGGATTGACCTAGAGCCACCAGATTTCTCATTTCATCAAAGTGACCACCACCACCACCACACTTATACCATGTCATATAATCATCATCATAGTAATAACAATGATTTTCCCACTACAAGCACCATGGGAAGTAGTAGCTTATCCTATGATGAAGATGCAAGCTTTGATGAGAGGCATGGCAAAATGCTCAAGTGTAATAGCTCAAACTCCATCAATATTTCTCAAGATGTTGCCAATTCACACATACCCTCCTCCTCTTCAGCACCTTCCAAATCTACCTTCATTTTGTCCTTTGAAAACTCAACTGTTGAACCTGCCCTCCATGATAGAGTACCTAATTATTATAATAATTCCCCTAATAAGCATTTTGAGGCCACATGTTCTTCCCTTTTGAGCTCAGAAATAACACTCATCAGCAGTGACCATGTCATCACTAAACCAAAAGCAAAGCAAGGGGCCAAGAAGTATAGAACCTCATCAGAGATCAAAGATCACATAATGGCTGAGAGGAAAAGGAGACAAGACCTCACTGAGAGGTTCATTGCACTTTCTGCCACCATACCCGGATTGAAGAAGACAGACAAGGCCTATATACTTCAAGAAGCTATCACATATATGAAACAACTTCAGGAGAGAGTGAAAGTGCTAGAGAATGAGAACAAGAGGAAAACAACATATTCAAAAATATTCATCAAGAAATCACAAGTGTGCTCAAGAGAAGAAGCCACATCATCATGTGAAACAAACTCTAATTATAGATCCACGCCACCACCACTACCTCAAGTTGAAGCAAGAATGTTGGAAAAGGAAGTTCTCATTGGAATCCACTGCCAGAAACAAAAGGATATTGTGCTCAAAATCATGGCCTTGCTTCAAAATCTCCATCTCTCTCTTGCTAGTAGTAGTGTATTGCCATTTGGGACTTCTACAGTAAAAGTTACAATCATTGCCCAGATGGGCGACAAATACGGTATGACAGTGAATGATCTAGTAAAAAGACTGAGGCAAGATCTCTTGAAGTCACATGACATTCAAGAGTCACATTCCAAAGAGTGCCAAATATGA 1173 0.4032 MEDSWENWISSLEMGEDNNSNGQSHTNSLDRDKLLTGIDLEPPDFSFHQSDHHHHHTYTMSYNHHHSNNNDFPTTSTMGSSSLSYDEDASFDERHGKMLKCNSSNSINISQDVANSHIPSSSSAPSKSTFILSFENSTVEPALHDRVPNYYNNSPNKHFEATCSSLLSSEITLISSDHVITKPKAKQGAKKYRTSSEIKDHIMAERKRRQDLTERFIALSATIPGLKKTDKAYILQEAITYMKQLQERVKVLENENKRKTTYSKIFIKKSQVCSREEATSSCETNSNYRSTPPPLPQVEARMLEKEVLIGIHCQKQKDIVLKIMALLQNLHLSLASSSVLPFGTSTVKVTIIAQMGDKYGMTVNDLVKRLRQDLLKSHDIQESHSKECQI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0889 390 MobiDBLite consensus disorder prediction 11 29 - -
Gso3g0889 390 Pfam Helix-loop-helix DNA-binding domain 201 246 IPR011598 GO:0046983
Gso3g0889 390 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 381 - -
Gso3g0889 390 PANTHER BHLH TRANSCRIPTION FACTOR 4 381 - -
Gso3g0889 390 Coils Coil 235 262 - -
Gso3g0889 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Gso3g0889 390 SMART finulus 202 251 IPR011598 GO:0046983
Gso3g0889 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 259 IPR036638 GO:0046983
Gso3g0889 390 MobiDBLite consensus disorder prediction 1 29 - -
Gso3g0889 390 Gene3D - 187 261 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0889 Gso-Chr3 31945794 31954725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0889 115 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.828 3.61e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g0889 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0889 - - gmx:100808919 726.857