Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0878 ATGGCTTCTCCGCCACCCTTATCGCTAAACGTCGTCGGATCAGACACGGACCCAAACACTAACACCTTCCCAACCGTTACAAGTTCGTTAACGCCGCCGTCACCGCGTCGTTCATCTCCGTTACAAAACCTCAGCCCCAGCATTCTGATCATCGTGACCGTCCTCGCCGTCACCGTCATCGTCTCCCTCGCGCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCGCCCCTCCCTCCGCTGCTGCGACGCCGATTTTCGCCTCCAGCCGCCGCATCTCGCCGGAGATACTCCACTCCTCGGCTTCCGCTTCCGCCTCCGTCATCGACACGCTCCCTGTCTTCACGTTCTCCTCCGTCACGCGCCGCTCCTCCTCGGTCGCCGGCGACTGCGCCGTGTGCCTCTCAAAGTTCCACCACCACGACCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTCTCGTGCCCGCTCTGCCGCTCCGCCATCGTCGCGGACGATTCCGACCTCGCGAAGATCCTCCGGCCGCCGTCCTCCGGCGGTAGCAGCGACAGCTTCCGCCTCGAGTTAGGAAACATCAGCCGCCGCGGAACCGACGGCGCCGCCGAAGGCGGCTCCGTCGCGCGTGGCGGTTCGCGCTCCTATTCCATTGGATCGTTCGAGTATTTAGTGGACGACGAATCAGAGGTTCCGTTCAGCCACGCTAGTCGGAGGAGCGTCGACGATGCGAAGGAATTTCCGGCGCCGGCGGAGGCTCCGGTGAGACACAACGAGGCAAATCTCGCTGGAGAAGTTGGCGGCGTTAGAAGCTGGCTTAAGGACTACGTGGATAGGGTTTCGGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAGGCTCCGGAAGGTTCTTCAGCGGTGGCGGCGGGAGCAGTGGTCGCCGAAGCGACGTCGTTCCGGTCGCTGCTGCGGAATACGACGTCGAAGGGAACCGAATTGGCGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1080 0.6287 MASPPPLSLNVVGSDTDPNTNTFPTVTSSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSAPPSAAATPIFASSRRISPEILHSSASASASVIDTLPVFTFSSVTRRSSSVAGDCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSAIVADDSDLAKILRPPSSGGSSDSFRLELGNISRRGTDGAAEGGSVARGGSRSYSIGSFEYLVDDESEVPFSHASRRSVDDAKEFPAPAEAPVRHNEANLAGEVGGVRSWLKDYVDRVSASISSRTASFRGSGRFFSGGGGSSGRRSDVVPVAAAEYDVEGNRIGEEISEMFRWLSGV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0878 359 SUPERFAMILY RING/U-box 116 186 - -
Gso3g0878 359 SMART ring_2 138 179 IPR001841 -
Gso3g0878 359 MobiDBLite consensus disorder prediction 1 41 - -
Gso3g0878 359 CDD mRING-H2-C3H2C2D_ZSWM2 138 180 - -
Gso3g0878 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 185 IPR013083 -
Gso3g0878 359 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gso3g0878 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 16 325 - -
Gso3g0878 359 MobiDBLite consensus disorder prediction 9 41 - -
Gso3g0878 359 Pfam Ring finger domain 137 180 IPR001841 -
Gso3g0878 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0878 Gso-Chr3 31704360 31705932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0878 28 187 C3H Transcription Factor Family AT4G28890 33.133 6.92e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0878 K10663 - gmx:100776516 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1027 7 13863544 13865119 Gso3g0878 3 31704360 31705932 GST