Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0875 ATGATCCTTCCCTCTTCTTCCCTTTTATTCACTCTCACAATCCTCTTGTGTTCTTTCCTTTCTTTTGTTTGTGCCAACCGTCTCATCCAACAAACATGCAAGAATTGCTCAAAAAATGACCCCAACATAAGCTACAAATTTTGCGTTACATCATTCCAATCAGACCATAGGAGCCACTACGCCAAAAACCTCCAAGAACTAGGACTAATCTCCATCAAGATAACAAGGCACAACGTGACGGATACTAATGCTCATATCAATGAGCTTTTGAAGAAAAACAAGAGCTTGGACCCATTTATCAAAGAATGCTTAGATGATTGCGTTGAAGTCTATTCCGACACCATTTCCACATTTAGAGAAGCCATTAGAGATTACAAGGCAAAACGTTATGCCGATTGTAATGTCAAGCTAAGCTCAATAATTGATGCCTCTACGACATGTGAAGATGGATTCAAGCAAAAGAATTATGCCATTTCGCCACTAACGAAAAGAAACAAGGATACCTTTCAGCTTTCCGCTATAGCACTTTCCATTGTTAACATGCTCATCAATACGGATAAATAA 564 0.3883 MILPSSSLLFTLTILLCSFLSFVCANRLIQQTCKNCSKNDPNISYKFCVTSFQSDHRSHYAKNLQELGLISIKITRHNVTDTNAHINELLKKNKSLDPFIKECLDDCVEVYSDTISTFREAIRDYKAKRYADCNVKLSSIIDASTTCEDGFKQKNYAISPLTKRNKDTFQLSAIALSIVNMLINTDK* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0875 187 CDD PMEI-Pla_a_1_like 33 181 IPR034088 -
Gso3g0875 187 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Gso3g0875 187 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 183 IPR035513 -
Gso3g0875 187 PANTHER PECTINESTERASE INHIBITOR DOMAIN-CONTAINING PROTEIN-RELATED 16 182 - -
Gso3g0875 187 Pfam Plant invertase/pectin methylesterase inhibitor 28 178 IPR006501 GO:0004857
Gso3g0875 187 SMART PMEI_2 24 178 IPR006501 GO:0004857
Gso3g0875 187 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 182 IPR035513 -
Gso3g0875 187 PANTHER PECTINESTERASE INHIBITOR-LIKE 16 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0875 Gso-Chr3 31658473 31659258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0875 71 186 Carbohydrate Esterase AT3G14310 26.772 9.27e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0875 - - gmx:100306248 359.377