Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0874 ATGGCCACTGCTACGAATGTCGTCGCCGCCCCACCATGCCAGCTCTTCCAGAAAGAACCCGACATCCAGATGATGTTGGCCGTCGACGTCCACCTCGACACCAAGAACTGCGACTTCCAAATGGAACATAACATCTTCAAGCACCGCAACGACGTTTTTCATGTCATGGATCCAAATGGGAAAAAGTTTATGCAAGATGATGTAGCTGACCGCATTCAACAGATGGCCTCCAGGAAGAGGAAAGCCACAACCTCCCAACCTCGGGAACCTTATGACACCACTCGGTTTGTTTCTGAGGTTGCGTCGGAGCGATATTCACAGAATGTTCACTCCCGGAACATCCTTCCAGAGAGGGACGTTAACCTCTTTGTGACTGTGTATCATGAATTCAGAAGAGAGCTGATCAGAAGAAACTGGCATAAGGCCTTGACTCAGCACATAGACGGGCACATTGATGTGGCCTTGGTCAAGGAGTTCTACTCGAACCTGTATGACCCTGAAGACAAATCACCAAAACAAGTTAGAGGGATGCTGATTAAGTTTGATGCGACATCACTGAATGCCTTTCTGGAGACACCACCACTCATTCAGCCAGGGGAGCAGTACCCCTCTTATTCTATTTTTTGCAGGACGCGCACTGATCCTCAAGAGCTTGCCTCCAAGCTTTGTATTCTAGGGCGCATGTTCGTTTTAAATGCTGAAGGAGCGCCTTGGAAGCTCCTGAGGAAGGATCTGAATACACTAGCCCAGACTTGGAGTGTGTTATCATACTCCAACCTCTTCTGA 786 0.4873 MATATNVVAAPPCQLFQKEPDIQMMLAVDVHLDTKNCDFQMEHNIFKHRNDVFHVMDPNGKKFMQDDVADRIQQMASRKRKATTSQPREPYDTTRFVSEVASERYSQNVHSRNILPERDVNLFVTVYHEFRRELIRRNWHKALTQHIDGHIDVALVKEFYSNLYDPEDKSPKQVRGMLIKFDATSLNAFLETPPLIQPGEQYPSYSIFCRTRTDPQELASKLCILGRMFVLNAEGAPWKLLRKDLNTLAQTWSVLSYSNLF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0874 261 PANTHER 40S RIBOSOMAL PROTEIN SA 10 111 IPR005707 GO:0003735|GO:0006412|GO:0015935
Gso3g0874 261 SUPERFAMILY Ribosomal protein S2 17 76 IPR023591 -
Gso3g0874 261 Pfam Putative plant transposon protein 136 259 IPR046796 -
Gso3g0874 261 PANTHER 40S RIBOSOMAL PROTEIN SA 10 111 - -
Gso3g0874 261 Gene3D - 21 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0874 Gso-Chr3 31544054 31572563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0874 4 91 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 42.045 3.55e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0874 K02998 - gmx:102668221 531.176