Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0821 ATGGGGCCAGTTCCAATCTTTAGCGCTGGAGTTTCAAAAAATTATGCAAATAATCAAGGCCTATGTGGAGGAAAAACATTGGCGCCTTGCCAAACCAAGTCTTCCAAGAGTAACTTGGCTGTTATTGCTGGAGCTGCTGCTGGCGGGGTGACTCTTGCGGCATTAGGATTGTGTATTGGATTGTTCTTCTTTGTGCGACGTGTTTCTTTCAAGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGTCTAAAAGGAACTAAACAAATTAAGGTTTCTATGTTTGAGAAATCAATTCCAAAAATGAAACTGAGTGATATCATGAAGGCTACTAACAACTTCAGTAATACCAATATGATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTGTCCTTGATGATGGCACGACACTTATGGTTAAGAGATTACAAGAATCTCAGTACACTGAAAAACAATTTATGTCTGAAATGGGTACGCTGGGTACTGTCAAACATCGCAATCTGGTTCCTCTTTTAGGTTTTTGCATGGCCAAAAGGGAGAGGCTTTTAGTCTATAAAAATATGCCAAATGGAATCCTCCATGACCAACTCCATCCTGCTGATGGTGTGAGCACCCTTGACTGGACTACAAGGCTCAAAATTGCAATTGGAGCTGCCAAAGGTTTAGCATGGCTTCATCATAGCTGCAATCCCTGTATTATCCACCGAAACATTAGCTCGAAGTGCATGTTGTTGGATGCAGATTTTGAGCCGAAAATTTCTGATTTTGGCCTTGCCAGACTGATGAACCCAATTGATACTCATTTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTAGGTTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCCACAACTAAAGGGGATATTTACAGCTTTGGAACTGTTCTTCTTGAGTTGGTGACAGGTGAAAGACCTACCAATGTCTATAAAGCTCCGGAAACTTTTAAAGGAAATCTGGTAGAATGGATTACGGAGCTCACAAGCAATGCAGAACACCATGATGCCATTGATGAATCACTAGTCAGCAAGGATGCTGATGGCGAGCTTTTCCAATTTCTAAAGGTTGTATGCAACTGTGTCTCACCAACGCCAAAGGAGAGGCCCACCATGTTTGAAGTGTATCAGCTTTTAAGAGCTATTGGGGGTAGATACAATTTCACAACTGAGGATGAGATATTGGTACCTACTGATATTGGTGATACTGATAAAATGGAGGAATTTATTGTAGCTCGAGAAGGAAGTTATTGA 1287 0.4134 MGPVPIFSAGVSKNYANNQGLCGGKTLAPCQTKSSKSNLAVIAGAAAGGVTLAALGLCIGLFFFVRRVSFKKKEEDPEGNKWARSLKGTKQIKVSMFEKSIPKMKLSDIMKATNNFSNTNMIGTGRTGTVYKAVLDDGTTLMVKRLQESQYTEKQFMSEMGTLGTVKHRNLVPLLGFCMAKRERLLVYKNMPNGILHDQLHPADGVSTLDWTTRLKIAIGAAKGLAWLHHSCNPCIIHRNISSKCMLLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATTKGDIYSFGTVLLELVTGERPTNVYKAPETFKGNLVEWITELTSNAEHHDAIDESLVSKDADGELFQFLKVVCNCVSPTPKERPTMFEVYQLLRAIGGRYNFTTEDEILVPTDIGDTDKMEEFIVAREGSY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0821 428 Gene3D Phosphorylase Kinase; domain 1 77 189 - -
Gso3g0821 428 PANTHER RECEPTOR-LIKE PROTEIN 55 1 405 - -
Gso3g0821 428 Gene3D Transferase(Phosphotransferase) domain 1 191 406 - -
Gso3g0821 428 CDD STKc_IRAK 122 390 - -
Gso3g0821 428 Pfam Protein tyrosine and serine/threonine kinase 119 389 IPR001245 GO:0004672|GO:0006468
Gso3g0821 428 SUPERFAMILY Protein kinase-like (PK-like) 93 390 IPR011009 -
Gso3g0821 428 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0821 428 PANTHER LRR RECEPTOR-LIKE KINASE 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0821 Gso-Chr3 30053121 30054994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0821 14 400 Receptor kinase-like Gene Family AT1G27190 47.194 8.60e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gso3g0821 PK_Tyr_Ser-Thr 9.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0821 - - gsj:114405112 846.654