Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0818 ATGGAGTACCAGAGAAAAACCATCATCACAAAACTTGTGAAATCATCCAAATTTCTCCCCAAAGTTATTCGCATTTCGGTGACGGATCAAGACGCCACAGACTCTTCTAGTGATGAAGAAGGAGAACATGCAAGAGTGAAGAAAGTGATTAATGAGATAAAGATTGTTTGTGTCAACAACAAGAAAAATCACAAAAATCACGACAACGACAGTAGTTGTTGCTATGCAAATGCAACCAAAGAGAATGAAAGTCTCAGACCACAACAACAAAACATTAATCCATTAAATAAGGTGGGCTACATGAATCAGAATCAAAATCTCAAACAGCACAAGTTTCGTGGCGTGCGGCAACGGCCCTGGGGCCGGTGGGCAGCCGAGATAAGAGACCCTACGCGGCGGACGCGAGTGTGGCTTGGCACGTTCGACACGGCTGAAGAGGCTGCCATGGTTTACGACAAAGCCGCTATTAAATTCAGAGGCGCTGAAGCCGTCACCAATTTCATCAAACCGCGGTTGAAAGATCACGAGTCAGTGTCCCTTGAATGTGACAGTGTTGTCAACGGAACGAGTTCTGCGTGTGCTTCACCCACTTCTGTTCTCGTGTTTCAGCCTTGGATAGAACCACCGTTATTGGAAGAAACGTTCAAAGAAGAAGAAGTGTTTAATGGGTTAACTACTGATGTTTATTGTGATGATGGGTTCTTGTTTTCCAATGAAGCACTCTGTGATCAACCTCTTCCTACGACGTTTTGTAATGTTGATTGCATTGATATTCCGTTGGATGAAGATCTTGAGTCATGTAAATGGGACGTAGATAATTATTTCAGTGATGATGCTTCATGGAAACAATGA 852 0.4331 MEYQRKTIITKLVKSSKFLPKVIRISVTDQDATDSSSDEEGEHARVKKVINEIKIVCVNNKKNHKNHDNDSSCCYANATKENESLRPQQQNINPLNKVGYMNQNQNLKQHKFRGVRQRPWGRWAAEIRDPTRRTRVWLGTFDTAEEAAMVYDKAAIKFRGAEAVTNFIKPRLKDHESVSLECDSVVNGTSSACASPTSVLVFQPWIEPPLLEETFKEEEVFNGLTTDVYCDDGFLFSNEALCDQPLPTTFCNVDCIDIPLDEDLESCKWDVDNYFSDDASWKQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0818 283 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Gso3g0818 283 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Gso3g0818 283 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Gso3g0818 283 PANTHER - 11 283 - -
Gso3g0818 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0818 Gso-Chr3 29737091 29738254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0818 4 206 AP2-EREBP Transcription Factor Family AT4G27950 40.807 5.15e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g0818 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0818 - - gmx:100815537 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0643 16 8286525 8287570 Gso3g0818 3 29737091 29738254 GST
Gso3g0818 3 29737091 29738254 Gso1g0677 1 21495270 21497410 PCT