LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0773	ATGGAGTTCGCGTCTTCTTCATCACCCTTCTCAAAATCCAAACCCCAATTCATGTACGATGTGTTCATCAATTTCAGGGGAGAAGACACCCGTAAGAAGTTCGTTTGTCATATCTATAAGGCCCTCTCAAATGCTGGAATCAACACTTTCATTGACGAGGAGAACATACAAAAGGGAATGACGCTGGATGAACTAATGACAGCAATAGAAGGGTCTCAGATAGCAATAGTTGTTTTCTCCAAAACCTATACTGAATCTACCTGGTGTCTTCGTGAGCTTCAAAAAATCATTGAATGCCACGAAAATTATGGGCAAAGAGTCGTGCCCGTATTTTACCATATTGACCCATCCCATATACGTCATCAGGAGGGTGATTTTGGAAGTGCGTTGAATGCAGTTGCAGAAAGAAGACATTCAGGAGAAGATCTGAAATCTGCCTTGTCCAATTGGAAGCGCGTACTAAAAAAAGCTACAGATTTCTCTGGTTGGAATGAGAGGGATTTCAGGAATGATGCTGAACTAGTGAAGGAAATTGTTAACGATGTTCTTACTAAACTGGAGTACGAAGTCTTGCCTATTACTCGATTCCCTGTTGGATTAGAGTCCCAGGTGCAAGAAGTGATTAGATTTATTGAAACAACCACATATTCTTGTATCATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCACAGCCAAAGCCATCTACAATCAAATTCATCGTTCATTCATGGATAAAAGTTTCATTGAGGATATTAGAGAAGCTTGTAAAAGAGATCGAGGGCAAATACGTTTACAAAAACAACTTCTTTCAGATGTTCTAAAAACAAAGGTGGAGATACATAGCATTGGGAGGGGAACAACTGTGATAGAGAACAGACTTTCTAAAAAAAGGTTACTCATTGTACTTGATGATGTGAATAAGAGTGGCCAATTAAAAGCTCTATGCGGAAATCTTCAATGGATTGGTGAAGGAAGTGTAATAATCATTACAACTAGAGATAAACACCTGTTTACGGGACTTAAAGTTGATTATGTTCACGAAATGAAGGAAATGCACGCAAATGAGTCCCTTGAACTTCTTAGTTGGCATGCTTTTAGAGAAGCAAAACCAAAAGAAGACTTCAATGAACTTGCAAGAAATGTAGTTGCTTATTGTGGAGGACTACCACTAGCACTTGAAGACCTTGGTTTATATTTAACTAATAGGACTACAAATGAGTGGAGAAGTGCATTGTCAAAACTAGAAACAACTCCCAATCCTCATGTTCAAGAGATATTAAAAATAAGCTTTGATGGGTTAAATGATGAGAAGGAAAAAGATATATTTCTTGATGTATGTTGCTTCTTTATTGGTAAAGACATAGCCTATGTTACGGAGATACTAAATGGTTGTGGACTACATTCGGACTGTGGAATACCAGTCCTCATAGACCGTAGCCTCATAAAAGTTGAAAAGAACAACAAACTTGGAATGCATAATTTGGTACAAGAAATGGGAAAAGAGATAATTCGTCAAAGTTCAAGAAAGAAACCTGGGAAGCGCAGTCGACTGTGGTTTAATGTGGAAGTAGTTGATGTATTGACAAAGAATACTGGGACAGAAGTTGTTGAGGGATTGGCTCTGAAATTCCATGTCAACAGCAGAAATTGCTTCAAAACTTGTGCTTTTGAGAAAATGCAGAGATTGAGACTATTACAACTTGAAAACATACAACTTGCTGGAGATTATGGGTATCTTTCTAAGGAGCTGAGATGGATGTGTTGGCAAGGGTTTCCTTCAAAATACATACCTAAAAACTTTAACATGGAAAATGTGATTGCAATTGATTTAAAACGCAGTAATCTTAGGCTAGTCTGGAAAGAACCCCAGGATTTGGCATCGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTGAAACCCCTGACTTTTCAAAACTACGAAATCTTGAAAAGCTCATTCTCAAAGATTGCCCACGTTTGTGCAAGGTACACAAGTCCATTGGAGATCTCCGCAATCTTATTCTGTTAAATTTGAAGGACTGTACAAGTCTTGGCAATCTCCCAAGGAGTGTTTATAAGTTAAAATCTGTGAAAACTCTCATCCTTTCGGGTTGTTCGAAGATTGACAAATTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTAATTGCTAAAAATGTTGTTGTGAAAGAAGTACCTTTTTCAATAGTAACCTTAAAAAGCATTGAATATATATCCCTATGTGAATATGAAGGATTATCGCATAATGTTTTTCCTTCTATCATTTTGTCTTGGATGTCTCCAACAATAAATCCCCTATCTTATATTCACCCATTTTGTTGCATATCATCATTTCTAGTTTCCATGCATATTCAGAATAATGCTTTTGGGGATGTAGCACCAATGCTTGGCGGCCTTGGAATTCTTCGTAGTGTTTTGGTGCAATGTGACACAGAACTTCAACTATTGAAACTAGTAAGAACAATTGTGGATTACATATATGATGTATATTTTACAGATTTAGAAATAACATCATACGCATCACGAATTTCAAAGCATTCCTTGAGTTCTTGGTTGATTGGAATTGGAAGTTACCAAGAAGTCTTCCAGATTCTCAGCAAGAGCATACATGAGGGATTGGCAATCAATGATTCTTGTGATGCTTTTCTTCCAGGTGACAATGATCCTCATTGGTTGGTCCGTATGGGTGAGGGAAATTCAGTGTATTTCACTGTGCCTGAGAATTGTCGCATGAAGGGAATGGCTTTGTGTGTTGTTTATTTAACAAACCCTAAAAACACAGCAGCTGAATGTCTTATTTATGTCTTAATGGTTAATTACACGAAGTGTTCCATCAAGATATACAAGCAAGATACAGTAATTTCCTTCAATGATGTAGATTGGCAGGGCATCATATCACATTTGGAACCTGGAGACAAGGTGAAGATTTTCGTGACTTTTGGGCATGGATTTGTGGTCAAGAAGACAGCTGTCTATCTTATAAGAACTTTGGGAGAACCCTCAGGCCCTTTGACTAGTTCCAAGCGAACACTAAAATGTTGGAGTCACTACCCACACCACTCGTGCAGCTGA	3114	0.3815	MEFASSSSPFSKSKPQFMYDVFINFRGEDTRKKFVCHIYKALSNAGINTFIDEENIQKGMTLDELMTAIEGSQIAIVVFSKTYTESTWCLRELQKIIECHENYGQRVVPVFYHIDPSHIRHQEGDFGSALNAVAERRHSGEDLKSALSNWKRVLKKATDFSGWNERDFRNDAELVKEIVNDVLTKLEYEVLPITRFPVGLESQVQEVIRFIETTTYSCIIGIWGMGGSGKTTTAKAIYNQIHRSFMDKSFIEDIREACKRDRGQIRLQKQLLSDVLKTKVEIHSIGRGTTVIENRLSKKRLLIVLDDVNKSGQLKALCGNLQWIGEGSVIIITTRDKHLFTGLKVDYVHEMKEMHANESLELLSWHAFREAKPKEDFNELARNVVAYCGGLPLALEDLGLYLTNRTTNEWRSALSKLETTPNPHVQEILKISFDGLNDEKEKDIFLDVCCFFIGKDIAYVTEILNGCGLHSDCGIPVLIDRSLIKVEKNNKLGMHNLVQEMGKEIIRQSSRKKPGKRSRLWFNVEVVDVLTKNTGTEVVEGLALKFHVNSRNCFKTCAFEKMQRLRLLQLENIQLAGDYGYLSKELRWMCWQGFPSKYIPKNFNMENVIAIDLKRSNLRLVWKEPQDLASLKILNLSHSKYLTETPDFSKLRNLEKLILKDCPRLCKVHKSIGDLRNLILLNLKDCTSLGNLPRSVYKLKSVKTLILSGCSKIDKLEEDIVQMESLTTLIAKNVVVKEVPFSIVTLKSIEYISLCEYEGLSHNVFPSIILSWMSPTINPLSYIHPFCCISSFLVSMHIQNNAFGDVAPMLGGLGILRSVLVQCDTELQLLKLVRTIVDYIYDVYFTDLEITSYASRISKHSLSSWLIGIGSYQEVFQILSKSIHEGLAINDSCDAFLPGDNDPHWLVRMGEGNSVYFTVPENCRMKGMALCVVYLTNPKNTAAECLIYVLMVNYTKCSIKIYKQDTVISFNDVDWQGIISHLEPGDKVKIFVTFGHGFVVKKTAVYLIRTLGEPSGPLTSSKRTLKCWSHYPHHSCS*	1038

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0773	1037	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	1008	IPR044974	GO:0006952
	Gso3g0773	1037	SUPERFAMILY	L domain-like	545	820	-	-
	Gso3g0773	1037	PRINTS	Disease resistance protein signature	219	234	-	-
	Gso3g0773	1037	PRINTS	Disease resistance protein signature	295	309	-	-
	Gso3g0773	1037	PRINTS	Disease resistance protein signature	388	402	-	-
	Gso3g0773	1037	PRINTS	Disease resistance protein signature	626	642	-	-
	Gso3g0773	1037	SUPERFAMILY	"Winged helix" DNA-binding domain	425	530	IPR036390	-
	Gso3g0773	1037	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	163	IPR035897	-
	Gso3g0773	1037	Pfam	TIR domain	19	187	IPR000157	GO:0007165
	Gso3g0773	1037	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	447	IPR027417	-
	Gso3g0773	1037	SMART	till_3	18	160	IPR000157	GO:0007165
	Gso3g0773	1037	Gene3D	-	354	437	IPR042197	-
	Gso3g0773	1037	Gene3D	-	184	348	IPR027417	-
	Gso3g0773	1037	ProSiteProfiles	TIR domain profile.	17	186	IPR000157	GO:0007165
	Gso3g0773	1037	Pfam	NB-ARC domain	203	423	IPR002182	GO:0043531
	Gso3g0773	1037	CDD	AAA	198	336	-	-
	Gso3g0773	1037	Gene3D	-	11	183	IPR035897	-
	Gso3g0773	1037	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	22	1008	-	-
	Gso3g0773	1037	Gene3D	Ribonuclease Inhibitor	544	839	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0773	Gso-Chr3	27873623	27878133	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0773	8	754	WRKY Transcription Factor Family	AT4G12020	30.530	1.15e-86	305

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0773	-		-	gmx:100783105	2089.31