Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0765 ATGGAAAACCAGTTCTTTCTGAATTCTGGGGTGTCACAAACACAGCACCACCACCCTCTTCACTTAGAATCTTCACCACCATCCAATCCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCACCAAACATGGGGATTCAACCAACAGTTATGAATTGTGCCTCTGAGCAAACACAACAAGATTGCTTTTACAACTCCAATTGGGACAAGTCAACAACAACAGATCAAGGCCTTCACCACTTTGATTCCTCAGCACTGAGTTCAATGGTCTCATCACCAGCAGCATCATCCAACCCCAACAACAACATGTCCAATGAGAATTTCATCATCCGGGAATTGATGGGGAAATTGGGAGCTATTGGGAACTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCATCTTCTTACATGAATACTAAAGGCAATAACAGCACCAACACTTCATGCTACAGCACCCCTTTGAGCTCCCCTCCAAAGGTGAACATTGTCAACAGCTTGGTGAATTTGAGGTTGGCAAATTTGGGAGGGGGAAAGTCAACAACAACGGTTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGATAGGAGTGTCCAATTGAGGGTGAACAATGCTGAATTGGCTCAAAGATCTGCACCAGCAATGGAACATGGTGGGAAGTTACCTAGAGTCTCAAGCAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAATTCAGCAATTCATCAGGAGCAGGAGAAAATGGAAGGGGCCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGGGGAAATTGGGGTGAAAACTTCCCAAGATATTATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACACTACTAATCCTACCAAGGGTGTTGAAGGCAGTGAGTATTCAAATTCAAAGCGCAGCAAGCCAAATGAGGGAAATGAAAATGGCCAAGTGAAGGTTGAGGAAGAGTCCAAAGCAGAGGAAGAGAAACAGAGCAAAAGTAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCACGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTAGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTCTGTCTATGAAATTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAGTCTTGTTACAAAAGATGTATTCCAATCAAACAATTCTTTGGCAACACACCCAAATGCAATAATATTCCCATTAGGTTCCTCAGCACAAGCCTTTTATGGGCACCAGCCTCAGCAAAACAACCCAGTTTTCCATAATAACATACCTAACAGAACGGCGACCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAATCTTGCCATGCAGTTATCTCCGCTAGATGTGTTTAATGAAGGTGGCTCTCAGTTTCCATTAGCATTCTTAGAGGATGATCTCCACACCATTGTTCAGATGGGGTTTGGCCAAGCTGCTAACAGGAAAACACCAATACAATCCTCGAGTTTCAACGGTTCAAATAATGTACCACAGATGAAAGTAGAGCTCTGA 1785 0.4364 MENQFFLNSGVSQTQHHHPLHLESSPPSNPSSVPSWQSLSPPNMGIQPTVMNCASEQTQQDCFYNSNWDKSTTTDQGLHHFDSSALSSMVSSPAASSNPNNNMSNENFIIRELMGKLGAIGNSDEIPQHSPHPLVVASSYMNTKGNNSTNTSCYSTPLSSPPKVNIVNSLVNLRLANLGGGKSTTTVLNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLRVNNAELAQRSAPAMEHGGKLPRVSSSPLLKTLGSQMGAQENKNSAIHQEQEKMEGANSQEESTISEQTPNGEIGVKTSQDIMNSRKRKASSKGKAKETSNTTNPTKGVEGSEYSNSKRSKPNEGNENGQVKVEEESKAEEEKQSKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLVTKDVFQSNNSLATHPNAIIFPLGSSAQAFYGHQPQQNNPVFHNNIPNRTATHCSVDPLDTSLCQNLAMQLSPLDVFNEGGSQFPLAFLEDDLHTIVQMGFGQAANRKTPIQSSSFNGSNNVPQMKVEL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0765 594 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 459 IPR036638 GO:0046983
Gso3g0765 594 MobiDBLite consensus disorder prediction 281 304 - -
Gso3g0765 594 Pfam Helix-loop-helix DNA-binding domain 394 441 IPR011598 GO:0046983
Gso3g0765 594 Coils Coil 437 457 - -
Gso3g0765 594 CDD bHLH_AtBPE_like 380 465 - -
Gso3g0765 594 SMART finulus 396 446 IPR011598 GO:0046983
Gso3g0765 594 PANTHER BHLH TRANSCRIPTION FACTOR 2 587 - -
Gso3g0765 594 MobiDBLite consensus disorder prediction 573 594 - -
Gso3g0765 594 MobiDBLite consensus disorder prediction 319 350 - -
Gso3g0765 594 MobiDBLite consensus disorder prediction 351 381 - -
Gso3g0765 594 Gene3D - 387 462 IPR036638 GO:0046983
Gso3g0765 594 MobiDBLite consensus disorder prediction 1 49 - -
Gso3g0765 594 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 440 IPR011598 GO:0046983
Gso3g0765 594 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 587 IPR024097 GO:0006355
Gso3g0765 594 MobiDBLite consensus disorder prediction 258 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0765 Gso-Chr3 27418903 27422678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0765 1 548 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.652 4.78e-100 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g0765 HLH 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0765 - - gmx:100776143 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g0703 16 10962709 10966345 Gso3g0765 3 27418903 27422678 GST
Gso18g1288 18 34363335 34368305 Gso3g0765 3 27418903 27422678 PCT
Gso16g0703 16 10962709 10966345 Gso3g0765 3 27418903 27422678 PCT
Gso3g0765 3 27418903 27422678 Gso18g1288 18 34363335 34368305 PCT
Gso3g0765 3 27418903 27422678 Gso16g0703 16 10962709 10966345 PCT