Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0737 ATGGCTAGAAAGAAGGTCGACATTACATACATAAGCAATCCCACCAAGAGGAAGGCAACTTTTAAAAAAAGGAAAAATGGTTTGCTCAAAAAGGTTTCTGAAATCAGCACCCTTTGCGCCACTGAAGCATGTGCTATAATTTATTCTCCAGATGAACCTGCAAAGCCTGAGGTATGGCCATCTGACCAAGGAGTCAAAAGTGTGATTTCCAGCTTTAGGGAAGTCTCTAAACTGGAACAAAGCAAGAAAATGTTGTGCCAAGAGAGCTTGCTGAGGAAGAATTTAATCAAAGCCCAGGAGCAACTGAAAAAACTGAAAACAGAAAATAGGAAAAAAGAGATGTCCCTTCTCATGTCTCAATACTTCACAATTGAGAACAACCTTGAGAATTCCAACACCGTTGATCTGAATGATAACTCATTCTTGGCTGATAAAAACTTGGAGGAAATAAGAATGAAAATCGATATGCACCAACCCCAAGAGGTGGCACCAACTGTTGAGAAGGGAGGAGAAACCATGTATCTAGGAGATCAAGGACTTGTGAATTATCATGTCCAAGGACCTGAGACCAATGGGGATGCCATGCCAAATCTCTGA 597 0.4104 MARKKVDITYISNPTKRKATFKKRKNGLLKKVSEISTLCATEACAIIYSPDEPAKPEVWPSDQGVKSVISSFREVSKLEQSKKMLCQESLLRKNLIKAQEQLKKLKTENRKKEMSLLMSQYFTIENNLENSNTVDLNDNSFLADKNLEEIRMKIDMHQPQEVAPTVEKGGETMYLGDQGLVNYHVQGPETNGDAMPNL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0737 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso3g0737 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso3g0737 198 Coils Coil 88 115 - -
Gso3g0737 198 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Gso3g0737 198 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso3g0737 198 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Gso3g0737 198 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
Gso3g0737 198 PANTHER MADS BOX PROTEIN 2 162 - -
Gso3g0737 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso3g0737 198 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso3g0737 198 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0737 Gso-Chr3 24920023 24921097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0737 1 156 Type I MADS-box Gene Family AT5G48670 46.154 8.77e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso3g0737 SRF-TF 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0737 - - gmx:100787546 394.43