Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0724 ATGGCTGAGGAGAAATCAGAGCAGCATTGTTCGGAGAATAAGCAAACTAATGCTAATTCCAGCTCTTCTGTATCAGAAGGCAGTGGCAGTGCTATGCCCAAGTCATCAACGGAACGTAAATCAGCATTGCCATCTAATCGGAGAACCACTGGCCCTGTTAGGCGTGCAAGGGGTGGTTGGACGGAAGAGGATGATGACACATTAACGAATGCTGTTCAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTACCGGGTAAATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTCATCCAGAACTCGTTAAAGGACCTTGGACTCAGGAGGAGGATGATAAAATAATTGAAATGGTGTCTACACATGGACCTAAAAAATGGTCTTTGATATCTAAGTCTTTGCCTGGTCGAATAGGAAAACAGTGCCGAGAACGATGGTGCAATCATCTTAATCCTGACATAAAGAAGGATCCCTGGACTCAGGAGGAGGAATTAGCCCTTATGGATGCTCATCGTATACATGGCAACAAATGGGCTGAAATAGCTAAGGTTCTTCATGGAAGGACTGATAATTCAATAAAGAACCATTGGAATAGTTCTTTGAAGAAAAAGATGAATTTCTATTTGGCTACGGGAAGACTTCCCCCCATTGTATCATCATCCAAAACTACAGACATTAATCTGGGTAACAGTGATAAGAATCAACTAGAGTCCTCAGAAACAGTTAGAGAGTTCGGTGATTCTTCAAATGTTCCTGCAAAAGGGTCTGCTGATTCTGACTGCATAGAATGCAATAGATCATCCAACAAAGGTTTCAGCTGTAGTAACTTAGAACCAGTGTTTGGAGATTATTTTAGAATAAACAGTGAGCCAAAATTTGAGAATCCTGGACTCAATGACAACCCAAGAGTTGATCATTGCATGAGTAATGGTGAAAAGAAGAGTTGCAGTTTAACCAGAAATTTTTATTCAAAGGAAAGTCAAACCCTTGGTTCTTTTTGTTATGAACCAACACTTCCTTTAGATTCTTATTATTCTAATATCTCTGGCCTGCAGCAAAATGAGTTATTTGCTTCGCCAATGATGTCATCTGTTGGTTACTTAACTCCACCTCCGGTGAAGGGAAGTGAATTATGCTCAGAATCTCCTGAATCAATATTGAAAAAGGCAGCTAAAACTTTCCCCACTCCTTCCATCTTGAGAAAGAGGAGTGTAGTCAAAAGACCTGTCACTCCTAGTGCGGTTGCAAAAGGAGTTAATGATTCACATGCTTATAATGAACAAGAGAGAACAAATGATATTACTGGTTCTGAAGTTGTGCGGTTACCTGTGAGTCCAGTAAACAATTGCTATGGGAGTAACATTCCCCATAATAAGGCATTCAACACAACTTCTCCATACCGATCAAGATCCAGGCAAACAGCTATTAAGTGTTTGGAGAAACAACTTGATTTTGCATTTGAAAAAGAGAAGCATGCTCGTAAGATGAAAAAATGTGATGACTGA 1521 0.3984 MAEEKSEQHCSENKQTNANSSSSVSEGSGSAMPKSSTERKSALPSNRRTTGPVRRARGGWTEEDDDTLTNAVQVFNGKNWKKIAEFLPGKSEVQCLHRWQKVLHPELVKGPWTQEEDDKIIEMVSTHGPKKWSLISKSLPGRIGKQCRERWCNHLNPDIKKDPWTQEEELALMDAHRIHGNKWAEIAKVLHGRTDNSIKNHWNSSLKKKMNFYLATGRLPPIVSSSKTTDINLGNSDKNQLESSETVREFGDSSNVPAKGSADSDCIECNRSSNKGFSCSNLEPVFGDYFRINSEPKFENPGLNDNPRVDHCMSNGEKKSCSLTRNFYSKESQTLGSFCYEPTLPLDSYYSNISGLQQNELFASPMMSSVGYLTPPPVKGSELCSESPESILKKAAKTFPTPSILRKRSVVKRPVTPSAVAKGVNDSHAYNEQERTNDITGSEVVRLPVSPVNNCYGSNIPHNKAFNTTSPYRSRSRQTAIKCLEKQLDFAFEKEKHARKMKKCDD* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0724 506 Pfam Myb-like DNA-binding domain 112 170 - -
Gso3g0724 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Gso3g0724 506 Gene3D - 56 108 - -
Gso3g0724 506 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Gso3g0724 506 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Gso3g0724 506 CDD SANT 60 103 IPR001005 -
Gso3g0724 506 CDD SANT 163 206 IPR001005 -
Gso3g0724 506 PANTHER MYB-RELATED PROTEIN B-LIKE 24 435 - -
Gso3g0724 506 MobiDBLite consensus disorder prediction 12 48 - -
Gso3g0724 506 PANTHER MYB PROTEIN-RELATED 24 435 - -
Gso3g0724 506 SMART sant 108 157 IPR001005 -
Gso3g0724 506 SMART sant 56 105 IPR001005 -
Gso3g0724 506 SMART sant 160 208 IPR001005 -
Gso3g0724 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 103 IPR017930 -
Gso3g0724 506 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Gso3g0724 506 MobiDBLite consensus disorder prediction 1 64 - -
Gso3g0724 506 Gene3D - 162 242 - -
Gso3g0724 506 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Gso3g0724 506 CDD SANT 111 155 IPR001005 -
Gso3g0724 506 Gene3D - 109 160 - -
Gso3g0724 506 ProSiteProfiles Myb-like domain profile. 52 103 IPR001005 -
Gso3g0724 506 Pfam Myb-like DNA-binding domain 57 103 IPR001005 -
Gso3g0724 506 SUPERFAMILY Homeodomain-like 55 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0724 Gso-Chr3 24353645 24361107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0724 47 497 MYB Transcription Factor Family AT5G02320 46.327 5.81e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g0724 Myb_DNA-bind_6 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0724 K09422 - gmx:100777236 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0724 3 24353645 24361107 Gso3g0724 3 24353645 24361107 ECH