Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0713 ATGGCGGGAGTGAGGGAGCAGGACCAGTATATGCCGATAGCAAACGTGATAAGGATCATGCGGAGGATTCTACCGGCGCACGCGAAGATCTCGGACGACGCGAAGGAGACAATCCAGGAGTGCGTGTCGGAGTACATAAGCTTCATCACGGCAGAGGCGAATGAGCGATGCCAGCGCGAGCAGCGAAAGACGGTGACTGCAGAGGACGTGCTGTGGGCGATGGAGAAGCTCGGCTTCGACAACTACGCCCACCCTCTCTCTCTTTACCTTCACCGCTATCGCAAGACCGAAGGCGAACCCGCTTCCGCCAGACGTGCTTCTGCATCTGCATCCCCATCGATGCAGATGCACCCACGCACACACCCACACTCACATCCACCTAATTATTCTCATCATGGCTTCGGAATGTTTGACTTTGACCCATCATCGCAAGGGTTTTACAGGGATGATGCATCTAGTTCTGGCTCTGGTGGATTTGTTGCCAGTTTTGATCCTTATGCTAACATCAAACGTGATCCCCTGTGA 525 0.541 MAGVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMEKLGFDNYAHPLSLYLHRYRKTEGEPASARRASASASPSMQMHPRTHPHSHPPNYSHHGFGMFDFDPSSQGFYRDDASSSGSGGFVASFDPYANIKRDPL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0713 174 MobiDBLite consensus disorder prediction 99 133 - -
Gso3g0713 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Gso3g0713 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 124 - -
Gso3g0713 174 Gene3D Histone, subunit A 2 123 IPR009072 GO:0046982
Gso3g0713 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso3g0713 174 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Gso3g0713 174 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Gso3g0713 174 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Gso3g0713 174 SUPERFAMILY Histone-fold 7 111 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0713 Gso-Chr3 23217982 23219390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0713 4 111 CCAAT-HAP3 Transcription Factor Family AT5G47670 81.481 4.53e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso3g0713 CBFD_NFYB_HMF 4.4e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0713 K08065 - gmx:100811633 330.102