Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0708 ATGTCTCATCAGGAGCAAGCCTTTGTGTCTCTTCTCTCTCAGCTCGCCCTTTCTTTCGACGGTGCCGTTTTGGGCTTGGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCTGCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCTGTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGCCGACGGAAACTCCGACGGTGGCAACATCGTAATTGTCCGCGGCACTGTCGATGCCAAGTCCGCCGTCGAAGGCGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAAGTGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA 1047 0.4766 MSHQEQAFVSLLSQLALSFDGAVLGLALAYAAVRTLFKFTATSAALRKLHRAPSVSVSDLRSLLAEIPSDADGNSDGGNIVIVRGTVDAKSAVEGGTWKTLRPGVLVSRESGDKSVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAEIKSCKDLPYFLNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0708 348 Pfam Zinc finger, C3HC4 type (RING finger) 294 341 - -
Gso3g0708 348 Pfam E3 Ubiquitin ligase 142 258 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gso3g0708 348 ProSiteProfiles Zinc finger RING-type profile. 296 336 IPR001841 -
Gso3g0708 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 348 IPR013083 -
Gso3g0708 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 256 348 IPR044247 GO:0004842
Gso3g0708 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 255 IPR044247 GO:0004842
Gso3g0708 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 255 - -
Gso3g0708 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 256 348 - -
Gso3g0708 348 SUPERFAMILY RING/U-box 295 341 - -
Gso3g0708 348 SMART ring_2 296 335 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0708 Gso-Chr3 22592782 22618621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0708 293 345 C3H Transcription Factor Family AT3G06140 39.623 1.57e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0708 K15688 - gmx:100800058 644.81