Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0704 ATGGCTAGAAAGAAGGTCAATCTTACATACATAAGCAATCCCGTGAAGAGGAAGGCAGTGTTCAACCAAAGGAAAAATGGTTTGCTAAAAAAGGTTGATGAAATCACTACGCTTTGTGACATTCATGCCTGTGCTATCATTTATACTCCAGATAAACCAGAGCCTGAGGTTTGGCCTTCTGACCAGGGAGTGGAAGATGTAATTTTTAGATTTAGGGGAGTTTCTGAATTGGCACGAAGCAAAAGAATGTTTTGTCAAGAGAAATTTTTGAAAAGAAACATAATCAAAGCCTGGGGGCAACTAAAGAAACTAAGGAATGAAAATAGGAAGAAGGAGATTGGCCTTTTCATGTGTCAATACTTTTTAGGTGGCAACCACCTTGACAATGCTAACATTATTGATTTGAATGATATTAGATTCTTGGTTGATAAAAAATTGGAGGAGATTACAAAGAAAATCGAAATGCTCCATGTCCAAGAGGTGACATCAGCTACTGAAAATAGAGGAGAAACCATGATTGAAGAAAAGCAAGCACTCATGACCAATGTGGATGCCATGCCAAATCTGAATTGGTCTAATGACAACATCAATGCTAGTGGTGGGGATAGTATGTTAACATTGGAAGATATTAATGTTCAGAGCGGTTGGCTTAACCAATTCATCCTTTCAAAAAGGTGA 678 0.3791 MARKKVNLTYISNPVKRKAVFNQRKNGLLKKVDEITTLCDIHACAIIYTPDKPEPEVWPSDQGVEDVIFRFRGVSELARSKRMFCQEKFLKRNIIKAWGQLKKLRNENRKKEIGLFMCQYFLGGNHLDNANIIDLNDIRFLVDKKLEEITKKIEMLHVQEVTSATENRGETMIEEKQALMTNVDAMPNLNWSNDNINASGGDSMLTLEDINVQSGWLNQFILSKR* 226
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0704 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 Gene3D - 15 95 IPR036879 GO:0003677|GO:0046983
Gso3g0704 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Gso3g0704 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 173 - -
Gso3g0704 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso3g0704 225 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso3g0704 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso3g0704 Gso-Chr3 22016551 22017374 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0704 1 189 Type I MADS-box Gene Family AT5G48670 43.915 1.28e-39 137
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso3g0704 SRF-TF 3.1e-13 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0704 - - gmx:100783663 450.669