Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0700 ATGGAAGGAGGTCGCCGGAGGATAACACTTTACGATCAAATGAAAGCCGGCAACAGCAGCCGATACTCACTCGCCAGCCTCATGCTGGGCGATGTCGTTTTCAAGAAGGTGGAAGCAGAAGAAGCAGAAGAAGCAGAAGCCGAAGCCGAAGCGAGCTGTGAGCTGAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAAAAACCTAGCAACAGCAGCAACAACACGAAGGATCGCAACTCTTGGAGAGCCTTCACGGCGAAGCTTCGGCTCAAGCGCGCCATCGGCTCGGCTTGGTCCTCCACCACCACTATCACTAATCACAGCAATGATGATAGAAATTTACCTAATATACCCGAAACTCGCCATGACTCGGACGAGTTGACTCAGCAGAACGACATCGTTGTGGAAGGCGCCAACGATTCGGATCCGATCGCGCGGTTCGGGTCACCGGTGGAACACGTGGAAGCCGTTGGCAACTCCTCCGACGGAGAGAACAACCACGAGGCGGTGGTTGGAGTGTCGCTGATGGATTTGTTGGAGGAAGCGGAGCAGGAAATGGATTTATATAGAGTGAGCGATGATGACGATGATGTGGCAGAATATGAGAAGAGAGAAGAAGAAAAAGGAGGTGTGGAAGAAGAAATAGGGAGTGTGGTGGAGTATAATTGTTGCGTGTGCATGGTGCGGCATAAAGGCGCGGCGTTTATTCCGTGCGGGCACACGTTCTGCAGAACGTGTTCGAGGGAGATTTGGGTGAGCAGAGGGAACTGCCCTCTCTGCAACAATTTAATTTTGGAAATTCTTGATATTTTCTGA 822 0.517 MEGGRRRITLYDQMKAGNSSRYSLASLMLGDVVFKKVEAEEAEEAEAEAEASCELSRSRTLQDIIREEKPSNSSNNTKDRNSWRAFTAKLRLKRAIGSAWSSTTTITNHSNDDRNLPNIPETRHDSDELTQQNDIVVEGANDSDPIARFGSPVEHVEAVGNSSDGENNHEAVVGVSLMDLLEEAEQEMDLYRVSDDDDDVAEYEKREEEKGGVEEEIGSVVEYNCCVCMVRHKGAAFIPCGHTFCRTCSREIWVSRGNCPLCNNLILEILDIF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0700 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 273 IPR013083 -
Gso3g0700 273 Coils Coil 39 59 - -
Gso3g0700 273 MobiDBLite consensus disorder prediction 106 127 - -
Gso3g0700 273 PANTHER OS01G0917900 PROTEIN 122 273 - -
Gso3g0700 273 PANTHER OS01G0917900 PROTEIN 2 113 - -
Gso3g0700 273 SMART ring_2 225 262 IPR001841 -
Gso3g0700 273 SUPERFAMILY RING/U-box 224 269 - -
Gso3g0700 273 ProSiteProfiles Zinc finger RING-type profile. 225 263 IPR001841 -
Gso3g0700 273 PANTHER OS01G0917900 PROTEIN 2 113 - -
Gso3g0700 273 PANTHER OS01G0917900 PROTEIN 122 273 - -
Gso3g0700 273 CDD RING-HC 225 262 - -
Gso3g0700 273 Pfam Zinc finger, C3HC4 type (RING finger) 223 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0700 Gso-Chr3 21471322 21472825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0700 1 273 C3H Transcription Factor Family AT3G25030 35.357 3.38e-45 151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1020 1 41475091 41477035 Gso3g0700 3 21471322 21472825 GST