Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0686 ATGAACAGGGGAATTGAAGTTCTTTCTCCAGCCTCATACCTCCGAAGTTCCAATTGGCTGTTCCAAGAAAGCTTGGGGACCAGGTGGACTCCACAGGAGAACAAGCTCTTTGAGAATGCTTTGGCTGTGTTTGACAAGGACACTCCGGACCGGTGGCTGAAGGTGGCGGCCTTGATTCCCGGCAAGACGGTCGGCGATGTGATCAAACAGTATAGGGAACTTGAAGAAGATGTGAGTGTCATTGAATCAGGGTTTATTCCACTTCCAGGGTACACTGCTGCTGATTCCTTTACATTGGAGTGGGTCAACAATCAAGGATTTGATGGGCTCAGGCAGTTTTATGGTGTTACTGGCAAAAGGGGTGCTTCCACTAGACCATCTGAGCAGGAGAGGAAGAAAGGTGTGCCATGGACTAAAGAGGAGCACAGGCAATTTCTGATGGGTCTGAAGAAGTATGGTAAAGGAGACTGGAGAAACATCTCTCGCAATTTTGTGACCACAAGAACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATCAGGCAACTAAGTGGAGGAAAGGACAAGAAGAGATCCAGTATCCATGACATCACAATGGTGAATCTCCCAGAAGCAAAATCTCCTTCATCAGAGAGTAACAACAGACCCTATTCACCAGATCACTCAGTGAAGGATGTGAACCCACCATCCCAGAATCAAAGATTGTCTACTACTATGGTAATTAAACAGGAACATGATTGGAAATTGCCATGTGAAACTGTGCCTATGCTCTTCAATTCCACAAATGGAAACATGTTCATGACACCACTTTGTGGGATTTCTTCATATGGATCTAAACCACTTCAGGAGCAGTATTTCCTCAGTGGATGCCAGTTTGGACCTTATGATACAATTATGCAAATGCCGTCCATGCAAAATCAATGA 930 0.4516 MNRGIEVLSPASYLRSSNWLFQESLGTRWTPQENKLFENALAVFDKDTPDRWLKVAALIPGKTVGDVIKQYRELEEDVSVIESGFIPLPGYTAADSFTLEWVNNQGFDGLRQFYGVTGKRGASTRPSEQERKKGVPWTKEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKKRSSIHDITMVNLPEAKSPSSESNNRPYSPDHSVKDVNPPSQNQRLSTTMVIKQEHDWKLPCETVPMLFNSTNGNMFMTPLCGISSYGSKPLQEQYFLSGCQFGPYDTIMQMPSMQNQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0686 309 MobiDBLite consensus disorder prediction 201 234 - -
Gso3g0686 309 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Gso3g0686 309 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Gso3g0686 309 CDD SANT 28 74 IPR001005 -
Gso3g0686 309 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Gso3g0686 309 Gene3D - 135 185 - -
Gso3g0686 309 PANTHER TRANSCRIPTION FACTOR DIVARICATA 1 246 - -
Gso3g0686 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Gso3g0686 309 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Gso3g0686 309 SMART sant 25 77 IPR001005 -
Gso3g0686 309 SMART sant 133 183 IPR001005 -
Gso3g0686 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Gso3g0686 309 MobiDBLite consensus disorder prediction 118 137 - -
Gso3g0686 309 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Gso3g0686 309 Gene3D - 22 88 - -
Gso3g0686 309 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Gso3g0686 309 MobiDBLite consensus disorder prediction 205 234 - -
Gso3g0686 309 CDD SANT 136 181 IPR001005 -
Gso3g0686 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 246 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0686 Gso-Chr3 20803579 20806263 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g0686 Myb_DNA-binding 4.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0686 - - gmx:778077 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0686 3 20803579 20806263 Gso18g0270 18 2393787 2396233 ECH
Gso3g0686 3 20803579 20806263 Gso3g0686 3 20803579 20806263 ECH