Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0680 ATGCCTTCCGATCGTGAAATTGATCATTTTGACTTTCTCAGTCAATGGCCCTCCGCCATTCCTGTTCTCAAGAGAATCTATGAAGTGTTTCTGAGTTTCAGAGGGGAAGACACGCGTGCTTCTTTCACTTCACATCTCTATACCGCTCTTCTGAATGCTGGAATCATTGTTTTCAAGGATGACGAGTCACTTCTAAGGGGAGATCAGATTGCACCCTCACTACGGCTAGCAATTGAGCAGTCTCGAATTTCTGTTGTTGTTTTCTCGAGAAATTACGCAGAGTCACGATGGTGTCTCGATGAGTTGGAGAAAATAATGGAGTGCCACAGAACCATAGGGCAGGTGGTAGTGCCAGTGTTCTACGATGTTGATCCTTCTGAAGTACGTCATCAAACTGGCGAGTTTGGTAGAACATTTGAAAAACTTTCCGACCGGATTTTAAAAGAGAAACAAGAGGTGGTGCCAGGATGGCAGGACTCAAAGAAGAACATGTTGAGCAGATGGAAGGAGCTGCGTTCCACGATTCGTAGTTCTGAAAGATGGAAAGAGCTGCTTTGGAAGACTACAGTGCAGAGTTGGAAGGAGGCGCTTCGGGAGGCTGCCTGCATCTCAGGGGTTGTAGTCCTAAATTCCAGGAATGAAAGTGAGGCTATCAAAAGCATTGTTGAAAATGTTACACATTTGTTAGACAAGAGAGAGTTGTTCGTTGCTGATAATCCAGTGGGAGTAGAACCTCGAGTGCAAGAAATGATTCAGCTCTTAGACCTAAAATCATCAAACCATGTTCTACTACTAGGGATGTGGGGGATGGGAGGCATTGGTAAAACAACCACTGCAAAAGCCATCTACAATAAGATTGGCCGCAATTTTGAGGGAAGGAGCTTCCTTGCACATATTAGGGAAGTTTGGGGGCAAGACACTGGCAAAATCTGTTTACAAAAACAAATATTGTTTGACATCTGCAAACAAACAGAAACGATCCATAATGTTGAATCAGGAAAGTATTTATTAAAGCAAAGACTTTGCCATAAAAGGGTACTTCTTGTACTTGACGATGTGAGTGAATTGGAACAATTGAATACTTTGTGTGGAAGTCGTGAATGGTTTGGTCGAGGGAGTAGAATAATCATCACAAGTAGAGATAAGCATATACTTAGAGGAAAAGGAGTTGACAAAGTATACATAATGAAAGGAATGGATGAAAGAGAGTCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGAAAGTCTTCCAGAAGATTTTATTGAACTTTCTGCAAATTTAATTGAATATTCTGGGGGATTACCACTAGCTCTTGAAGTCCTTGGGTGTTATTTGTTTGATATGGAGGTAACAGAATGGAAGACTGTATTGCAGAAACTCAAGAGAATTCCTAATTGTCAAGTACAAAAGAAGTTAAAAATAAGTTATGATGGTTTAAGTGATGATACAGAGAGAGAAATATTCCTTGATATAGCTTGTTTCTTTATTGGAATGGACCGAAATGATGTTATATGTATATTAAATGGTTGTGGACTTTTCGCTGAACATGGAATACGTGTGCTTGTAGAGCGAAGCCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATTCGAGCAAAATCACCGAAGGAGCCTGAGGAGCGTAGTAGGCTATGGTTTCACGAGGATGTTCTTGATGTATTATCAAAAGAAACTGGAACAAAAGCTGTTGAGGGTTTGACTTTGATGCTACCAAGAACTAATACAAAATGCTTGAGTACTACAGCTTTTAAGAAGATGAAGAAACTCAGGTTGCTTCAACTTGCTGGTGTTCAACTTGCTGGAGATTTTAAGAACCTTTCAAGAGATTTGAGATGGCTATGCTGGCATGGATTTCCTTTAAAATGCATACCGACAGACTTTTATCAAGGAAGTTTAGTTTCCATTGAGTTAGAAAACAGCAATGTCAAGCTTTTGTGGAAAGAAACTCAGTTGATGGAAAAGTTGAAAATTCTTAATCTTAGTCATTCTAGTAATTTGACACAGACCCCAGACTTCTCCAACTTACCAAATCTTGAAAAGCTAATACTCATTGATTGTCCAAGATTATCTAAGGTATCTCATACTATTGGACGTCTCAAGGAAGTTGTCATGATAAATTTGAAAGACTGTGTTAGTCTTCGTAACCTTCCAAGAAGCATATATAAGTTGAAATCTCTGAAAACTCTCATTCTTTCTGGATGTTTAATGATTGACAAGTTAGAAGAGGACTTGGAGCAGATGAAGTCTTTGACAACCCTGATTGCAGATAATACTGCAATAACAAGAGTGCCCTTTTCATTAGTAAGGTCAAGAAGTATTGGATATATTTCTCTGTGCGGCCATGAAGGATTCTCACGTGATGTGATTCCCTCTATCATATGGTCGTGGATGTCACCAACGAAAAATCCCTCATGCCTAGTCCAATCATATGTGGGCATGTCATCCCTTGTCTCTTTAAATATACCAAATAGTAGTTCCCAAGATTTATCAACTATTTCCAAAGACCTTCCAAAGCTCAGAAGTCTTTGGGTGGACTGCAGCTCAAAACCTCAACTATCTCGAGATACAAGAATAATTTTGGATGCTTTATATGCCACAACAAATTTAGGGGAATTGGAATCAACTGCAACTACATCACAAGTGCCAAATATAAAAACGTCTGCGTTAATTGAATGCAATAGTCAAGTGCACTTTTCTGGATCAAAAAGTTCTTTGAAATCTCTTTTAATTCATATGGGAATGAACTGCCAAGGCTCATATATTCTAAAACAAAGAATTTTACAGAATATGACTACTAGTGGGTGTTACTATGGTTTGCTCCCAGGTGACAATTATCCTGATTGGTTAACCTTTAATTTTGACGGCTCTTCTGTAACTTTTGATGTCCCTCGAGTGAATGGGCGTAACTTGAAAACAATGATGTGCATTATCCACTGTTTTACTCCTGACAACATCACATCAGATGGCCTTAAAAATGTGTTGATAATAAATCACACAAAGAACACCATTCAGCTTTATAAGAGAGATACATTAGTATCCTTTGAAGATGAGGAATGGCAAATAGTAGTATCAAATATTGAACCTGGTAACAATGTGGAGGTGATTGTTGTTTTTGAGAATCGATTCATTGTGAAGAAGACAACAGTTTATCTGATTTATGATGAACCAATTGATAAAAAGTTAGAGTATTGCCATGCATCTGATAAGAATGTTATTGTTTCCAGTGGCGATGAAAATATATCCACTGTTAGGTGGATCTCTCTTCAAGAGGAACCCACCAATGACTTTAAACAAAAACAGAAAAGAAGAAAAATTGAATGA 3384 0.3848 MPSDREIDHFDFLSQWPSAIPVLKRIYEVFLSFRGEDTRASFTSHLYTALLNAGIIVFKDDESLLRGDQIAPSLRLAIEQSRISVVVFSRNYAESRWCLDELEKIMECHRTIGQVVVPVFYDVDPSEVRHQTGEFGRTFEKLSDRILKEKQEVVPGWQDSKKNMLSRWKELRSTIRSSERWKELLWKTTVQSWKEALREAACISGVVVLNSRNESEAIKSIVENVTHLLDKRELFVADNPVGVEPRVQEMIQLLDLKSSNHVLLLGMWGMGGIGKTTTAKAIYNKIGRNFEGRSFLAHIREVWGQDTGKICLQKQILFDICKQTETIHNVESGKYLLKQRLCHKRVLLVLDDVSELEQLNTLCGSREWFGRGSRIIITSRDKHILRGKGVDKVYIMKGMDERESIELFSWHAFKQESLPEDFIELSANLIEYSGGLPLALEVLGCYLFDMEVTEWKTVLQKLKRIPNCQVQKKLKISYDGLSDDTEREIFLDIACFFIGMDRNDVICILNGCGLFAEHGIRVLVERSLVTVDDKNKLGMHDLLRDMGREIIRAKSPKEPEERSRLWFHEDVLDVLSKETGTKAVEGLTLMLPRTNTKCLSTTAFKKMKKLRLLQLAGVQLAGDFKNLSRDLRWLCWHGFPLKCIPTDFYQGSLVSIELENSNVKLLWKETQLMEKLKILNLSHSSNLTQTPDFSNLPNLEKLILIDCPRLSKVSHTIGRLKEVVMINLKDCVSLRNLPRSIYKLKSLKTLILSGCLMIDKLEEDLEQMKSLTTLIADNTAITRVPFSLVRSRSIGYISLCGHEGFSRDVIPSIIWSWMSPTKNPSCLVQSYVGMSSLVSLNIPNSSSQDLSTISKDLPKLRSLWVDCSSKPQLSRDTRIILDALYATTNLGELESTATTSQVPNIKTSALIECNSQVHFSGSKSSLKSLLIHMGMNCQGSYILKQRILQNMTTSGCYYGLLPGDNYPDWLTFNFDGSSVTFDVPRVNGRNLKTMMCIIHCFTPDNITSDGLKNVLIINHTKNTIQLYKRDTLVSFEDEEWQIVVSNIEPGNNVEVIVVFENRFIVKKTTVYLIYDEPIDKKLEYCHASDKNVIVSSGDENISTVRWISLQEEPTNDFKQKQKRRKIE* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0680 1127 Pfam TIR domain 27 178 IPR000157 GO:0007165
Gso3g0680 1127 SUPERFAMILY L domain-like 539 868 - -
Gso3g0680 1127 SMART till_3 26 178 IPR000157 GO:0007165
Gso3g0680 1127 CDD AAA 241 381 - -
Gso3g0680 1127 Gene3D Ribonuclease Inhibitor 573 955 IPR032675 -
Gso3g0680 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 493 IPR027417 -
Gso3g0680 1127 Gene3D - 14 160 IPR035897 -
Gso3g0680 1127 Gene3D - 205 391 IPR027417 -
Gso3g0680 1127 PRINTS Disease resistance protein signature 264 279 - -
Gso3g0680 1127 PRINTS Disease resistance protein signature 340 354 - -
Gso3g0680 1127 PRINTS Disease resistance protein signature 433 447 - -
Gso3g0680 1127 PRINTS Disease resistance protein signature 671 687 - -
Gso3g0680 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 1074 IPR044974 GO:0006952
Gso3g0680 1127 Pfam NB-ARC domain 246 475 IPR002182 GO:0043531
Gso3g0680 1127 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 149 IPR035897 -
Gso3g0680 1127 Gene3D - 398 482 IPR042197 -
Gso3g0680 1127 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 33 1074 - -
Gso3g0680 1127 ProSiteProfiles TIR domain profile. 25 229 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0680 Gso-Chr3 20607119 20615965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0680 27 788 WRKY Transcription Factor Family AT4G12020 30.651 2.49e-81 290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0941 1 37925509 37952323 Gso3g0680 3 20607119 20615965 GST