Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0671 ATGATAGTTGCTATGGACTTGAATGCCTCGCCGGTTCCGGAGGAAGATGAAGATATTTTTGAGGAGAAGATACATGTTGAAGAGTTTCATGAACCTGAAGAACGCATAGAAACTGGAGCTGATATAGCACGCCGGGAGCGTGAAGAAAGAAAGAGAAGGTTGAAGAGAGAACGACCGGATGATAGACCTGTACATGTGTCACAGTCACATGCATACGATCAGTTATTTCATACCAAGAACCAAAGATCATATGATAAAAGCAGGCTTCCTCCAGGGTGGTTGGATTGCCCTTCATCTGGCCAGGAAATTTGTTGCATGATACCTTCTAAGGTTCCACTTGGTGAATCATTCAATGACTGCATTCCTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCACTCGATACTATCCTGTGTCAGATTTAAAAAAAGAGTGCATCAAACATGTTAAGATTCAATGCAGGGGGCGCAATTCTGTACCTGATAATTTATCTGTGAACCAGTTTGTCTATGAGGTTACACAATTTTTGTCACGTCAAAAGCACTCAAAAAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACAGGATACATGATCATCCACTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGAAGCTCGCACTCCAGGAATCTACAAACCTGATTACATTGATGCATTGTACACATTTTATCATGAGAAAAAACCTGAAATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAGAGATCTTCTGAATTTGATCTCAATGGTGAAGCAGTTCCAGATGATGATGATGATGGAGTACCAGACCCTGATTTGCAGGAGAACCATGAGACAGACACACGAATGACAAATGATGATGTTTTAGGAGATGAGATACCTACTGATCAGCAAGATGCATTGCGTCAGTTCTGTTATCAAACGCTTAAATTGGGTGTTGGGGCCAGGGGACACACACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAATTGTTACGACAACGCTATTATTATGCAACATGGAAAGCAGATGGTACAAGATATATGATGCTAATAACAATGGATGGATGTTACTTGATTGATAGAAGTTTTAATTTTCGAAGGGTCCAAATGAGATTTCCTTGCAGAAGTACAAATGATGGTTTGGGCGAGAAGACCCACCACTTCACATTACTTGATGGTGAGATGGTTATTGATACATTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATATATGATATGATGGCAATCAACCAAGTATCAATAATAGAGCGTCCCTTCTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCACGAGCGACATAATATATATCAGAGCAGAAATCCTTACTATAGATATGACCTGGAACCGTTCAGGGTGAGGAGGAAAGACTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTATATACCACGTACCCATGAAGGACTCTTGAAGTGGAAATATGCTTATCTGAATTCAGTTGATTTTCTTTTCGAGGTTGATGGTGATCGTGAGCTACTTTTTCTCAATGAGCGGGGAAAGAAGAAACTTTTGGAAGGGAATAGGGTTGAATTCACAGATGGTTCAGATCCCTCACTTTATTCTGGAAAGATAATTGAATGTTCTTGGGATTTTGACAAACTGGAATGGAAGTATATGCGAATCAGAACAGATAAATCAACTCCGAATGAGTTTAATACTTACAGGAAGGTGCTGCGAAGCATAAGAGACAACATCACCGAGGAAGATTTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCTGACCGGATCAGAATTGATAGTAAAGCGAATCAGCATGCTAATGTCGCAAGGCGAAGGTGA 2052 0.3996 MIVAMDLNASPVPEEDEDIFEEKIHVEEFHEPEERIETGADIARREREERKRRLKRERPDDRPVHVSQSHAYDQLFHTKNQRSYDKSRLPPGWLDCPSSGQEICCMIPSKVPLGESFNDCIPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKECIKHVKIQCRGRNSVPDNLSVNQFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARTPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGVPDPDLQENHETDTRMTNDDVLGDEIPTDQQDALRQFCYQTLKLGVGARGHTQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRSTNDGLGEKTHHFTLLDGEMVIDTLPDSQKQERRYLIYDMMAINQVSIIERPFYERWKMLEKEVIEPRNHERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIKRLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAYLNSVDFLFEVDGDRELLFLNERGKKKLLEGNRVEFTDGSDPSLYSGKIIECSWDFDKLEWKYMRIRTDKSTPNEFNTYRKVLRSIRDNITEEDLLNEISEIIRLPMYADRIRIDSKANQHANVARRR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0671 683 MobiDBLite consensus disorder prediction 285 318 - -
Gso3g0671 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Gso3g0671 683 MobiDBLite consensus disorder prediction 287 301 - -
Gso3g0671 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Gso3g0671 683 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 683 - -
Gso3g0671 683 SMART dsp_5 148 263 IPR020422 GO:0006470|GO:0008138
Gso3g0671 683 MobiDBLite consensus disorder prediction 302 318 - -
Gso3g0671 683 CDD RNA_5'-triphosphatase 92 258 - -
Gso3g0671 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Gso3g0671 683 SUPERFAMILY Nucleic acid-binding proteins 557 667 IPR012340 -
Gso3g0671 683 CDD Adenylation_mRNA_capping 326 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso3g0671 683 Gene3D DNA ligase/mRNA capping enzyme 314 553 - -
Gso3g0671 683 PANTHER MRNA-CAPPING ENZYME 3 683 - -
Gso3g0671 683 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Gso3g0671 683 PIRSF mRNA_capping_HCE 75 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gso3g0671 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 267 IPR020422 GO:0006470|GO:0008138
Gso3g0671 683 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso3g0671 683 Gene3D - 588 660 IPR012340 -
Gso3g0671 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 609 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gso3g0671 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 316 554 - -
Gso3g0671 683 MobiDBLite consensus disorder prediction 31 67 - -
Gso3g0671 683 MobiDBLite consensus disorder prediction 31 72 - -
Gso3g0671 683 Pfam mRNA capping enzyme, C-terminal domain 558 651 IPR013846 -
Gso3g0671 683 Gene3D Protein tyrosine phosphatase superfamily 64 284 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0671 Gso-Chr3 20429019 20442149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0671 1 683 Protein tyrosine phosphatase (PTP) family AT3G09100 68.650 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0671 K13917 - gmx:100806992 1377.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0671 3 20429019 20442149 Gso3g0671 3 20429019 20442149 ECH
Gso1g0931 1 37560308 37579504 Gso3g0671 3 20429019 20442149 GST