LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0659	ATGCCAACAGAGATTGCAATGAACAACAGAAGGTATGAAGTGTTTATGAGCTTCAGAGGAGAAGATACTCGTGCTACTTTCACTTCACATCTCTATGCCGCTCTTCAAAATGCCGGAATCATTGTTTTCAAGGATGACGAGTCACTTCCAAGGGGAGATCAGATCTCAGGCTCACTCCTGCTAGCAATCGAACAATCTCAAATTTCGATTGTTGTTTTCTCAACAAATTACGCAGATTCGCGGTGGTGTCTGCAAGAGTTGGAGAAAATAATGTCTTGTAACAGAACCATAGGGCAGGTGGTTCTGCCAGTGTTCTATGATGTCGATCCCTCTCAAGTACGCTATCAAACTGGCCCCTTTGGAGAATCATTTCAAAACCTTTCCAACAGGATTTTAAAAGATGATGACGAGAAAGCGGTCGGAGAGGGCGAATATGATAAGGAATATATGATGAGCAGGGTTTTGATCAGTCGTTGGAGGAAGGTACTTCGTGAGGCTGCTAGCATCGCAGGGGTTGTAGTTCTAAATTCCAGGAATGAAAGTGAGACTATAAAAAACGTTGTTGAAAATGTTACACGTTTGTTGGACAAGATAGAGTTGCCCCTTGTCGATAATCCCGTGGGAGTAGAATCTCGAGTGCAAGACATGATTGAGCTACTAGACCTAAACCACAAACAATCAAATTCAAATGATGTTTTGCTATTAGGAATATGGGGAATGGGAGGCATTGGTAAAACAACCATTGCAAAAGCCATTTACAATAAGATTGGTCGCAATTTTGAGGGAAGGAGCTTTCTTGAACAAATTGGGGAACTTTGGAGGCAAGACACAATTCGTTTCCAAGAACAACTTCTATTTGATATCTACAAAACGAAAAGAAAGATACATAATGTTGAATTAGGAAAACAAGCTTTGAAGGAAAGACTTTGCAGTAAAAGGGTATTTCTTGTACTTGATGATGTGAATGATGTGGAGCAATTGAGTGCTTTATGTGGAAGTCGCAGATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATAAGCATATTCTTAGAGGGGATAGAGTTGACAAAATTTACACAATGAAAGAAATGGATGAAAGTGAGTCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCAAGTCCAAGAGAAGGTTTTACTGAACTTTCAAATGATGTTATTGAATATTCTGGGGGTTTGCCATTAGCTCTTACAGTCCTTGGTTGCCATTTGTTTGATATGAAGATAATAGAATGGAAGGCTGTATTAGACAAACTTAAGAGAATTCCTCATGATCAAGTACAAAAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACAGAGAGAGACATATTCCTTGATATAGCTTGTTTCTTTATTGGAATGGATCGGAATGATGCTATGTGTATCTTAAATGGTTGTGGACTTTTCGCAGAAAATGGAATACGCGTTCTTGTAGAGCGAAGTCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATTCGTGCAAAATCACCAAAGGATCTTGAGGAGCGTAGCAGGTTATGGTTTAATGAGGATGTGCTTGATGTATTAGCAAAAAAAACTGGAACGAAAACCATTGAGGGTCTGGCTTTGAAGTTACCATTAACCAATTCAAATTGTTTTAGCACTGAAGCATTTAAGGAGATGAAGAAACTCCGATTGCTTCAACTTTCCGGCGTACAACTTGATGGAGATTTTGAATATCTTTCCAAAGATCTTAGATGGCTTTGTTGGAATGGATTTCCTTTAAAATGCATACCCAAAAACTTTCATCAAGGAAGTCTAGTTTCCATTGAGTTAGAAAATAGTAATGTTAAACTTGTGTGGAAAGAGGCCCAGTTGATGGAGAAATTGAAAATTCTCAATCTTAGTCATTCTCATAATTTAACACAGACCCCAGACTTTTCAAATTTGCCTAATCTGGAAAAGCTAGTGCTGATAGATTGTCCAAGGTTGTTTGAGGTCTCCCATACCGTTGGACATCTCAATAAAATTCTTATGATAAATTTGAAAGATTGTATTAGCCTTCATAGCCTTCCAAGAAGCATCTACAAGTTGAAATCTCTTAAAACACTCATTCTCTCTGGATGTTTGAAGATTGACAAGTTGGAAGAGGACTTGGAACAAATGGAGTCTTTGATGACCCTTATTGCAGATAACACTGCAATAACAAAAGTTCCCTTTTCAATAGTCACATCAAAAAGCATTGGATACATTTCTATGTGCGGCTATGAAGGATTCTCATGTGATGTGTTTCCTTCTATTATTTTGTCTTGGATGTCACCAATGAGTAGTCTCTCGTCCCACATTCAAACATTCGCAGGCATGCCATCTCCTATTTCTTTACATGTGGCTAATAATAGTTCCCATAATCTATTATCTATTTTTGAGGACCTTCCAAAGCTTCGAAGTCTTTGGGTAGATTGTGGAACTAAACGTCAACTATCTCAAGAAACAACAATCATTTTAGATGCTTTATATGCCATAAATTCTAAAGCATTGGAATCAATTGCAACAACATCACAATTACCAAATGTGAATGCTTCAACTTTAATTGAATGCGGCAATCAAGTGCACATTTCAGGATCAAAAGATTCCTTGACATCTCTTTTAATTCAAATGGGAATGAGTTGCCAAATCGCTCATATTTTACAGAATATGAATACTAGTGAGAATGGTGGTTGTTTGCTCCCGGGTGATAGTCATCCAGATTGGTGGACTTTCCACAGTGAAGATTCTTCTGTGATTTTTGAAATCCCTCAAGTGAACAAACGGAACTTGAAGACAATGATGTGCCATGTCCATTATTCTTCCCCAGTCAATATAGCAACAGATGGCTTGAAAAATTTGTTGGTGATTAATCACACAAAGACCACCATTCAGCTTTACAAGAGTGATGCATTAGCTTCCTTAGAAGACGAGGAGTGGCAAAGGGTATTATCAAATATAGAGCCTGGTAACAAAGTGGAAATAATTGTTGTTTTTGGGAGCAGGTTAACTATTGTTAACAAGACCACGATTTATCTCATATATGAGCCAATGAATGAAAAAATGGAGCACTGCCATGCGCCAAATAAGAATGTAATTGTTTTTAATGGTGATGAAAATGTATGTAATGACAGGTCAATCTCTCAAGTGAAATTCAAGGATGACGTAGGGTGTGTTTCTGTAAAAAGAGTAATTAAGTGCTTATTGAATAAGTGCTTATCATGTAAAAGCTTTACTGCAAAATCAGAAAAGAAGAAAAGTTGA	3330	0.3757	MPTEIAMNNRRYEVFMSFRGEDTRATFTSHLYAALQNAGIIVFKDDESLPRGDQISGSLLLAIEQSQISIVVFSTNYADSRWCLQELEKIMSCNRTIGQVVLPVFYDVDPSQVRYQTGPFGESFQNLSNRILKDDDEKAVGEGEYDKEYMMSRVLISRWRKVLREAASIAGVVVLNSRNESETIKNVVENVTRLLDKIELPLVDNPVGVESRVQDMIELLDLNHKQSNSNDVLLLGIWGMGGIGKTTIAKAIYNKIGRNFEGRSFLEQIGELWRQDTIRFQEQLLFDIYKTKRKIHNVELGKQALKERLCSKRVFLVLDDVNDVEQLSALCGSRRWFGSGSRIIITTRDKHILRGDRVDKIYTMKEMDESESIELFSWHAFKQASPREGFTELSNDVIEYSGGLPLALTVLGCHLFDMKIIEWKAVLDKLKRIPHDQVQKKLKISYDGLSDDTERDIFLDIACFFIGMDRNDAMCILNGCGLFAENGIRVLVERSLVTVDDKNKLGMHDLLRDMGREIIRAKSPKDLEERSRLWFNEDVLDVLAKKTGTKTIEGLALKLPLTNSNCFSTEAFKEMKKLRLLQLSGVQLDGDFEYLSKDLRWLCWNGFPLKCIPKNFHQGSLVSIELENSNVKLVWKEAQLMEKLKILNLSHSHNLTQTPDFSNLPNLEKLVLIDCPRLFEVSHTVGHLNKILMINLKDCISLHSLPRSIYKLKSLKTLILSGCLKIDKLEEDLEQMESLMTLIADNTAITKVPFSIVTSKSIGYISMCGYEGFSCDVFPSIILSWMSPMSSLSSHIQTFAGMPSPISLHVANNSSHNLLSIFEDLPKLRSLWVDCGTKRQLSQETTIILDALYAINSKALESIATTSQLPNVNASTLIECGNQVHISGSKDSLTSLLIQMGMSCQIAHILQNMNTSENGGCLLPGDSHPDWWTFHSEDSSVIFEIPQVNKRNLKTMMCHVHYSSPVNIATDGLKNLLVINHTKTTIQLYKSDALASLEDEEWQRVLSNIEPGNKVEIIVVFGSRLTIVNKTTIYLIYEPMNEKMEHCHAPNKNVIVFNGDENVCNDRSISQVKFKDDVGCVSVKRVIKCLLNKCLSCKSFTAKSEKKKS*	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0659	1109	SMART	till_3	11	169	IPR000157	GO:0007165
	Gso3g0659	1109	Gene3D	Ribonuclease Inhibitor	498	885	IPR032675	-
	Gso3g0659	1109	PRINTS	Disease resistance protein signature	234	249	-	-
	Gso3g0659	1109	PRINTS	Disease resistance protein signature	308	322	-	-
	Gso3g0659	1109	PRINTS	Disease resistance protein signature	401	415	-	-
	Gso3g0659	1109	PRINTS	Disease resistance protein signature	639	655	-	-
	Gso3g0659	1109	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	171	IPR035897	-
	Gso3g0659	1109	Gene3D	-	192	360	IPR027417	-
	Gso3g0659	1109	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	1034	IPR044974	GO:0006952
	Gso3g0659	1109	SUPERFAMILY	"Winged helix" DNA-binding domain	437	543	IPR036390	-
	Gso3g0659	1109	Pfam	TIR domain	12	130	IPR000157	GO:0007165
	Gso3g0659	1109	SUPERFAMILY	L domain-like	557	896	-	-
	Gso3g0659	1109	Gene3D	-	8	191	IPR035897	-
	Gso3g0659	1109	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	20	1034	-	-
	Gso3g0659	1109	ProSiteProfiles	TIR domain profile.	10	195	IPR000157	GO:0007165
	Gso3g0659	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	194	461	IPR027417	-
	Gso3g0659	1109	Pfam	NB-ARC domain	226	446	IPR002182	GO:0043531
	Gso3g0659	1109	Gene3D	-	366	450	IPR042197	-
	Gso3g0659	1109	Coils	Coil	726	746	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0659	Gso-Chr3	20080824	20090357	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0659	8	756	WRKY Transcription Factor Family	AT4G12020	30.401	2.16e-82	293

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0659	-		-	gmx:100808753	2159.03